Browse Element(s) Details


OsAffx.14829.1.S1_x_at

Description tigr:9633.m02302
TID=OsAffx.14829.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Glycosyl hydrolase family 10, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2556011/11endo-1,4-beta-xylanase, putative
LOC_Os05g233503/11endo-1,4-beta-xylanase, putative
LOC_Os05g238302/11endo-1,4-beta-xylanase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g25520NANA5+14754772..14755125hypothetical protein
LOC_Os05g25530OsAffx.14828.1.S1_at11/115+14759455..14759947hypothetical protein
LOC_Os05g25540Os.54960.1.S1_at11/115+14762435..14765963Protein kinase domain containing protein, expressed
LOC_Os05g25550Os.52873.1.S1_a_at11/115+14770253..14774757ATPase 7, plasma membrane-type, putative, expressed
LOC_Os05g25550OsAffx.5813.1.S1_x_at2/115+14770253..14774757ATPase 7, plasma membrane-type, putative, expressed
LOC_Os05g25550Os.8093.2.S1_x_at1/115+14770253..14774757ATPase 7, plasma membrane-type, putative, expressed
LOC_Os05g25560OsAffx.14829.1.S1_x_at11/115+14776360..14778210endo-1,4-beta-xylanase, putative
LOC_Os05g25560OsAffx.14829.2.S1_x_at3/115+14776360..14778210endo-1,4-beta-xylanase, putative
LOC_Os05g25570OsAffx.380.1.S1_at1/115+14780035..14785167retrotransposon protein, putative, unclassified
LOC_Os05g25570OsAffx.25972.1.S1_at1/115+14780035..14785167retrotransposon protein, putative, unclassified
LOC_Os05g25570OsAffx.15069.1.S1_at1/115+14780035..14785167retrotransposon protein, putative, unclassified
LOC_Os05g25580NANA5+14788494..14791639F-box domain containing protein, expressed
LOC_Os05g25590OsAffx.24052.1.S1_at1/115+14795825..14796469hypothetical protein
LOC_Os05g25600Os.14637.1.S1_at11/115+14800284..14808285expressed protein
LOC_Os05g25600Os.46613.1.S2_at1/115+14800284..14808285expressed protein
LOC_Os05g25600Os.38273.2.S1_x_at1/115+14800284..14808285expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14829.1.S1_x_at--266--1831Chr05:14776869..14776893 (25 bp)
ACGCCCGAGAAGTACATCGAGCTGA
LOC_Os05g25560
OsAffx.14829.1.S1_x_at--429--1171Chr05:14776859..14776883 (25 bp)
AGTACATCGAGCTGATCGACGCGCT
LOC_Os05g25560
OsAffx.14829.1.S1_x_at--257--1811Chr05:14776781..14776805 (25 bp)
ACCCGTCCGGCGAGGTCATCTGCGG
LOC_Os05g25560
OsAffx.14829.1.S1_x_at--877--472Chr05:14776719..14776743 (25 bp)
ATCTGGATCACCGAGCTGGACGTGA
LOC_Os05g25560
OsAffx.14829.1.S1_x_at--615--392Chr05:14776713..14776737 (25 bp)
ATCACCGAGCTGGACGTGAGCGAGC
LOC_Os05g25560
OsAffx.14829.1.S1_x_at--620--4992Chr05:14776586..14776610 (25 bp)
GCATGTGGCGCCAGGACGCGTCCCT
LOC_Os05g25560
OsAffx.14829.1.S1_x_at--1130--5792Chr05:14776557..14776581 (25 bp)
GACGCCGACGGCACCGTCAACGAGG
LOC_Os05g25560
OsAffx.14829.1.S1_x_at--886--8431Chr05:14776530..14776554 (25 bp)
GGCCAGAGGCTGGTCAATCTCCGGC
LOC_Os05g25560
OsAffx.14829.1.S1_x_at--1061--9971Chr05:14776443..14776467 (25 bp)
TACCATGGCACGTACGTCGTGCAGG
LOC_Os05g25560
OsAffx.14829.1.S1_x_at--842--5092Chr05:14776436..14776460 (25 bp)
GCACGTACGTCGTGCAGGTGACGAC
LOC_Os05g25560
OsAffx.14829.1.S1_x_at--941--6471Chr05:14776399..14776423 (25 bp)
GATACTCAAGACGTTCACCGTCGAC
LOC_Os05g25560
Target Sequence 
ACGCCCGAGAAGTACATCGAGCTGATCGACGCGCTCCGCCGCGGCGGCGCGGCGGTGGGCGGCGTCGGCATCCAGGGCCA
CGTCTCCAACCCGTCCGGCGAGGTCATCTGCGGCGCGCTCGACAAGCTCGCCGCGTCGACGGGGCTCCCCATCTGGATCA
CCGAGCTGGACGTGAGCGAGCCCGACGTGTCCCTCCGCGCCGACGACCTGGAGGTGGTGCTCCGCGAGGCGTACGCGCAC
CCGGCCGTCGCCGGCGTCGTGCTCTGGGGTTTCATGCAGGGCCGCATGTGGCGCCAGGACGCGTCCCTCGTCGACGCCGA
CGGCACCGTCAACGAGGCCGGCCAGAGGCTGGTCAATCTCCGGCGGGAGTGGACGTCCGACGCGCGCGGGACCATCGACG
GCGACGGCCATTTCACGTTCAGGGGCTACCATGGCACGTACGTCGTGCAGGTGACGACGGCGACGGGGAAGATACTCAAG
ACGTTCACCGTCGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14829.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis