Browse Element(s) Details


Os.14637.1.S1_at

Description gb:AK071302.1
DB_XREF= gi:32981325
TID=Os.14637.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14637 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023088K17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023088K17, full insert sequence.
FL= gb:AK071302.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2560011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g25560OsAffx.14829.1.S1_x_at11/115+14776360..14778210endo-1,4-beta-xylanase, putative
LOC_Os05g25560OsAffx.14829.2.S1_x_at3/115+14776360..14778210endo-1,4-beta-xylanase, putative
LOC_Os05g25570OsAffx.380.1.S1_at1/115+14780035..14785167retrotransposon protein, putative, unclassified
LOC_Os05g25570OsAffx.25972.1.S1_at1/115+14780035..14785167retrotransposon protein, putative, unclassified
LOC_Os05g25570OsAffx.15069.1.S1_at1/115+14780035..14785167retrotransposon protein, putative, unclassified
LOC_Os05g25580NANA5+14788494..14791639F-box domain containing protein, expressed
LOC_Os05g25590OsAffx.24052.1.S1_at1/115+14795825..14796469hypothetical protein
LOC_Os05g25600Os.14637.1.S1_at11/115+14800284..14808285expressed protein
LOC_Os05g25600Os.46613.1.S2_at1/115+14800284..14808285expressed protein
LOC_Os05g25600Os.38273.2.S1_x_at1/115+14800284..14808285expressed protein
LOC_Os05g25610OsAffx.29697.1.S1_at1/115+14809903..14813564transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g25620OsAffx.27012.1.S1_at10/115+14815312..14816168expressed protein
LOC_Os05g25630OsAffx.14830.1.S1_at11/115+14819319..14819806inhibitor I family protein
LOC_Os05g25640Os.53884.1.S1_at11/115+14821903..14826462Trans-cinnamate 4-monooxygenase, putative, expressed
LOC_Os05g25650NANA5+14828581..14828877expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14637.1.S1_at--289--5851Chr05:14803302..14803326 (25 bp)
GAGCGTTTTGACCAAAAGAGTTCCT
LOC_Os05g25600
Os.14637.1.S1_at--364--2731Chr05:14803469..14803493 (25 bp)
AAGCACGCCGGGTCAGCACAAGGCG
LOC_Os05g25600
Os.14637.1.S1_at--625--871Chr05:14803520..14803544 (25 bp)
ATGGCCAGATACAAGAGGACCACCG
LOC_Os05g25600
Os.14637.1.S1_at--301--4411Chr05:14803523..14803547 (25 bp)
GCCAGATACAAGAGGACCACCGGCC
LOC_Os05g25600
Os.14637.1.S1_at--852--4451Chr05:14803609..14803633 (25 bp)
GCCTCCGACAACCATCGGTGTAATA
LOC_Os05g25600
Os.14637.1.S1_at--796--3231Chr05:14803617..14803641 (25 bp)
CAACCATCGGTGTAATACTAACTTG
LOC_Os05g25600
Os.14637.1.S1_at--233--7891Chr05:14803641..14803665 (25 bp)
GGTTACTACGAGAAACTCTGTGACA
LOC_Os05g25600
Os.14637.1.S1_at--903--5971Chr05:14803650..14803674 (25 bp)
GAGAAACTCTGTGACAAGACCAATA
LOC_Os05g25600
Os.14637.1.S1_at--250--7371Chr05:14803660..14803684 (25 bp)
GTGACAAGACCAATATGTTATGTTG
LOC_Os05g25600
Os.14637.1.S1_at--435--5811Chr05:14803684..14803708 (25 bp)
GAGAATCATTGGTGTAATTTAGTTA
LOC_Os05g25600
Os.14637.1.S1_at--410--5431Chr05:14803726..14803750 (25 bp)
GAACCATTAGTTTAATAGTAACTTG
LOC_Os05g25600
Target Sequence 
GAGCGTTTTGACCAAAAGAGTTCCTTTANTGTATTTGTTATTGGCCTTTTCAATNTCACTGAATTGCGAAATGTTCNGGT
TGCAGGGACTAAGTCAAGCCCNNGNAGAGATGATTCGGCTAAGNGTGGGNCACCNCNGNTAGCGAGGAGGTCGTTCNNAC
CCGCATCCCCTCAAGCACGCCGGGTCAGCACAAGGCGCGCGTGCTCCCGGCGGCTGNCCGCGGATGGCCAGATACAAGAG
GACCACCGGCCAGCCCTCCATGGCCGACCCGTTGCCCTCTTTCACTNCCATACCTATCCACCACGCCGCCNTCGCCTCCG
ACAACCATCGGTGTAATACTAACTTGGTTACTACGAGAAACTCTGTGACAAGACCAATATGTTATGTTGAGAATCATTGG
TGTAATTTAGTTACTAAGAGAAAATGTTAAGAACCATTAGTTTAATAGTAACTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14637.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis