Browse Element(s) Details


Os.53884.1.S1_at

Description gb:AK100598.1
DB_XREF= gi:32985807
TID=Os.53884.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53884 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-002-H11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023107C01, full insert sequence.
FL= gb:AK100598.1 gb:AK104994.2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2564011/11Trans-cinnamate 4-monooxygenase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g25600Os.14637.1.S1_at11/115+14800284..14808285expressed protein
LOC_Os05g25600Os.46613.1.S2_at1/115+14800284..14808285expressed protein
LOC_Os05g25600Os.38273.2.S1_x_at1/115+14800284..14808285expressed protein
LOC_Os05g25610OsAffx.29697.1.S1_at1/115+14809903..14813564transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g25620OsAffx.27012.1.S1_at10/115+14815312..14816168expressed protein
LOC_Os05g25630OsAffx.14830.1.S1_at11/115+14819319..14819806inhibitor I family protein
LOC_Os05g25640Os.53884.1.S1_at11/115+14821903..14826462Trans-cinnamate 4-monooxygenase, putative, expressed
LOC_Os05g25650NANA5+14828581..14828877expressed protein
LOC_Os05g25660OsAffx.18481.2.A1_at11/115+14843308..14844057hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009411biological_processresponse to UV
GO:0009416biological_processresponse to light stimulus
GO:0009611biological_processresponse to wounding
GO:0009699biological_processphenylpropanoid biosynthesis
GO:0009809biological_processlignin biosynthesis
GO:0019761biological_processglucosinolate biosynthesis
GO:0005783cellular_componentendoplasmic reticulum
GO:0005792cellular_componentmicrosome
GO:0004497molecular_functionmonooxygenase activity
GO:0016709molecular_functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD or NADH as one donor, and incorporation of one atom of oxygen
GO:0016710molecular_functiontrans-cinnamate 4-monooxygenase activity
GO:0019825molecular_functionoxygen binding
GO:0046409molecular_functionp-coumarate 3-hydroxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53884.1.S1_at--200--1131Chr05:14822479..14822503 (25 bp)
AGTCCAAGATCCTGGTGAACGCGTG
LOC_Os05g25640
Os.53884.1.S1_at--361--8611Chr05:14822467..14822491 (25 bp)
TGGTGAACGCGTGGTTCCTCGCCAA
LOC_Os05g25640
Os.53884.1.S1_at--715--4371Chr05:14822447..14822471 (25 bp)
GCCAACGACCCCAAGCGGTGGGTGC
LOC_Os05g25640
Os.53884.1.S1_at--516--9151Chr05:14822425..14822449 (25 bp)
TGCGCCCCGACGAGTTTAGGCCGGA
LOC_Os05g25640
Os.53884.1.S1_at--626--5091Chr05:14822367..14822391 (25 bp)
GCACGGCAACGACTTCCGCTTCGTG
LOC_Os05g25640
Os.53884.1.S1_at--520--5971Chr05:14822210..14822234 (25 bp)
GAGAAGCCCGGCCAGTTCAGCAACC
LOC_Os05g25640
Os.53884.1.S1_at--1135--1211Chr05:14822197..14822221 (25 bp)
AGTTCAGCAACCAGATCCTCAAGCA
LOC_Os05g25640
Os.53884.1.S1_at--522--7831Chr05:14821949..14821973 (25 bp)
GGTAATCTATACTGCCCAAACATTG
LOC_Os05g25640
Os.53884.1.S1_at--857--4551Chr05:14821936..14821960 (25 bp)
GCCCAAACATTGCAAATATATCATT
LOC_Os05g25640
Os.53884.1.S1_at--557--231Chr05:14821921..14821945 (25 bp)
ATATATCATTTCTGGCTATTTACAC
LOC_Os05g25640
Os.53884.1.S1_at--1161--10591Chr05:14821912..14821936 (25 bp)
TTCTGGCTATTTACACTTCATCAAG
LOC_Os05g25640
Target Sequence 
AGTCCAAGATCCTGGTGAACGCGTGGTTCCTCGCCAACGACCCCAAGCGGTGGGTGCGCCCCGACGAGTTTAGGCCGGAG
AGGTTCCTGGAGGAGGAGAAGGCCGTGGAGGCGCACGGCAACGACTTCCGCTTCGTGCCCTTCGGCGTCGGCCGCCGCAG
CTGCCCCGGGATCATCCTCGCGCTGCCCATCATCGGGATCACGCTCGGCCGCCTCGTCCAGAGCTTCGACCTGCTGCCGC
CGCCCGGGATGGACAAGGTGGACACCACCGAGAAGCCCGGCCAGTTCAGCAACCAGATCCTCAAGCACGCCACCGTCGTC
TGCAAGCCCATCGACGCCTAGGTCGATCGATCGACCTACTCAAATCAATCATGTGCTGCGTTATCCTATTGCACTAAAAA
AAGGTTGTATTTTTGTTTGGGGGGGGGGGGGGGGGGTAGTTATGTGTGTGTTCTGTGAGGCAGGCACCTGTTGTTGTAGG
TTTACTTAACTTTTTTTTTTCTTATACTTGTTGGTTCAAACTTAATTATTGGTAATCTATACTGCCCAAACATTGCAAAT
ATATCATTTCTGGCTATTTACACTTCATCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53884.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis