Browse Element(s) Details


OsAffx.18481.2.A1_at

Description tigr:9633.m02311
TID=OsAffx.18481.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2566011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g25630OsAffx.14830.1.S1_at11/115+14819319..14819806inhibitor I family protein
LOC_Os05g25640Os.53884.1.S1_at11/115+14821903..14826462Trans-cinnamate 4-monooxygenase, putative, expressed
LOC_Os05g25650NANA5+14828581..14828877expressed protein
LOC_Os05g25660OsAffx.18481.2.A1_at11/115+14843308..14844057hypothetical protein
LOC_Os05g25670NANA5+14857291..14857590hypothetical protein
LOC_Os05g25680Os.49598.1.S1_at4/115+14859041..14859619hypothetical protein
LOC_Os05g25690NANA5+14862924..14864351retrotransposon protein, putative, unclassified
LOC_Os05g25700OsAffx.4429.1.S1_at11/115+14868926..14874720WRKY DNA binding domain containing protein
LOC_Os05g25700Os.7949.1.S1_at1/115+14868926..14874720WRKY DNA binding domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18481.2.A1_at--1140--10591Chr05:14843474..14843498 (25 bp)
TTCTGCTGTCACAACTCACTAGCAA
LOC_Os05g25660
OsAffx.18481.2.A1_at--83--5511Chr05:14843509..14843533 (25 bp)
GAACACGGCAAACAATGGCGTCACT
LOC_Os05g25660
OsAffx.18481.2.A1_at--183--8471Chr05:14843524..14843548 (25 bp)
TGGCGTCACTTATTTACCTACATCG
LOC_Os05g25660
OsAffx.18481.2.A1_at--846--491Chr05:14843575..14843599 (25 bp)
ATCGGCAAACAGTGGCATCCGCTGC
LOC_Os05g25660
OsAffx.18481.2.A1_at--1123--5095Chr11:2140057..2140081 (25 bp)
GCACGAGCTGGATCCCGAAGTGGTT
NONE
OsAffx.18481.2.A1_at--490--7914Chr11:2140078..2140102 (25 bp)
GGTTGAACGCGATGGTCACCTGCAT
NONE
OsAffx.18481.2.A1_at--1092--1131Chr05:14843649..14843673 (25 bp)
AGTCTGGCAGGTACTCGTCGCTGTG
LOC_Os05g25660
OsAffx.18481.2.A1_at--65--2474Chr11:2140142..2140161 (20 bp)
AACAACATCACCTCGTTGTGGTGCG
NONE
OsAffx.18481.2.A1_at--1124--7251Chr05:14843698..14843722 (25 bp)
GTGCGAGAAGTAGCTATTCGACACA
LOC_Os05g25660
OsAffx.18481.2.A1_at--654--10071Chr05:14843855..14843879 (25 bp)
TAGTGCGTCGGCAAGGCGTGCACAT
LOC_Os05g25660
OsAffx.18481.2.A1_at--164--2951Chr05:14843867..14843891 (25 bp)
AAGGCGTGCACATTCGCGTTGCCGG
LOC_Os05g25660
Target Sequence 
TTCTGCTGTCACAACTCACTAGCAAAACAAGCCAAGAACACGGCAAACAATGGCGTCACTTATTTACCTACATCGGCAAA
CAAGCCAAGAACATGGCAAACATCGGCAAACAGTGGCATCCGCTGCACGAGCTGGATCCCGAAGTGGTTGAACGCGATGG
TCACCTGCATCGCCGAGTCTGGCAGGTACTCGTCGCTGTGCCCCAACAACATCACCTCGTTGTGGTGCGAGAAGTAGCTA
TTCGACACAATGATCGCCGTCGACCCCATGATGGCGTCGATGAGCCCGTCGGCGCACCGCGACAGCGCACAGTGGTCCAC
CCACACGTCGCGCGCCGAGTAGAGCGAGATGCCGTCGCCGTCGGAGTGGGTGCACCACCCGTAGTGCGTCGGCAAGGCGT
GCACATTCGCGTTGCCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18481.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis