Browse Element(s) Details


Os.49598.1.S1_at

Description gb:AK062802.1
DB_XREF= gi:32972820
TID=Os.49598.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49598 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-118-E08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-107-D02, full insert sequence.
FL= gb:AK062802.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g256804/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g25660OsAffx.18481.2.A1_at11/115+14843308..14844057hypothetical protein
LOC_Os05g25670NANA5+14857291..14857590hypothetical protein
LOC_Os05g25680Os.49598.1.S1_at4/115+14859041..14859619hypothetical protein
LOC_Os05g25690NANA5+14862924..14864351retrotransposon protein, putative, unclassified
LOC_Os05g25700OsAffx.4429.1.S1_at11/115+14868926..14874720WRKY DNA binding domain containing protein
LOC_Os05g25700Os.7949.1.S1_at1/115+14868926..14874720WRKY DNA binding domain containing protein
LOC_Os05g25710OsAffx.27013.1.S1_at11/115+14878501..14878863hypothetical protein
LOC_Os05g25720OsAffx.31069.3.S1_at11/115+14882761..14885793hypothetical protein
LOC_Os05g25720OsAffx.31069.2.S1_x_at1/115+14882761..14885793hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49598.1.S1_at--484--4571Chr05:14859369..14859393 (25 bp)
GCGCGCAGTGGAGCTTATTGCAACT
LOC_Os05g25680
Os.49598.1.S1_at--229--2551Chr05:14859390..14859414 (25 bp)
AACTCGTTATCTTGCTTGATTCCAA
LOC_Os05g25680
Os.49598.1.S1_at--737--6571Chr05:14859407..14859431 (25 bp)
GATTCCAAATTAGACGCTGCAGAGC
LOC_Os05g25680
Os.49598.1.S1_at--282--1531Chr05:14859429..14859453 (25 bp)
AGCAGATGATTCACTCACGGATGAC
LOC_Os05g25680
Os.49598.1.S1_at--1040--6411Chr05:14859618..14859642 (25 bp)
GATCTCATCTGACCATGGTGGCATG
NONE
Os.49598.1.S1_at--330--7731Chr05:14859634..14859658 (25 bp)
GGTGGCATGATATCTGATCAAACTA
NONE
Os.49598.1.S1_at--268--2632Chr05:14859659..14859683 (25 bp)
AACCTGAATGTTGCCATCCCTGATT
NONE
Os.49598.1.S1_at--268--6692Chr05:14859668..14859692 (25 bp)
GTTGCCATCCCTGATTGATTTACTC
NONE
Os.49598.1.S1_at--1119--9891Chr05:14859688..14859712 (25 bp)
TACTCATGTAATCCTGATCTCCACT
NONE
Os.49598.1.S1_at--897--3031Chr05:14859697..14859721 (25 bp)
AATCCTGATCTCCACTGTTCCAGTA
NONE
Os.49598.1.S1_at--13--1131Chr05:14859737..14859761 (25 bp)
AGTAGTTGTTACCACTTACTAGTGT
NONE
Target Sequence 
GCGCGCAGTGGAGCTTATTGCAACTCGTTATCTTGCTTGATTCCAAATTAGACGCTGCAGAGCAGATGATTCACTCACGG
ATGACGGGGGAGATCGAGCAGTGCGGCGGCGAGATCGAGGCGGAGATCGAGCGGGCCAAGGAGGTCGTCGCCAACAAGGG
CAGGGCGCTCGACGACGACCGCGAGAGGTTCCAGAAGGCCGCCGTCGCCGCGCTCAACATCCTCAGCGGCGGCGCCGCCG
GCAGCATCTGATCTCATCTGACCATGGTGGCATGATATCTGATCAAACTAAACCTGAATGTTGCCATCCCTGATTGATTT
ACTCATGTAATCCTGATCTCCACTGTTCCAGTACTACTTGATAGTACTAGTAGTTGTTACCACTTACTAGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49598.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis