Browse Element(s) Details


OsAffx.27013.1.S1_at

Description tigr:9633.m02316
TID=OsAffx.27013.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2571011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g25670NANA5+14857291..14857590hypothetical protein
LOC_Os05g25680Os.49598.1.S1_at4/115+14859041..14859619hypothetical protein
LOC_Os05g25690NANA5+14862924..14864351retrotransposon protein, putative, unclassified
LOC_Os05g25700OsAffx.4429.1.S1_at11/115+14868926..14874720WRKY DNA binding domain containing protein
LOC_Os05g25700Os.7949.1.S1_at1/115+14868926..14874720WRKY DNA binding domain containing protein
LOC_Os05g25710OsAffx.27013.1.S1_at11/115+14878501..14878863hypothetical protein
LOC_Os05g25720OsAffx.31069.3.S1_at11/115+14882761..14885793hypothetical protein
LOC_Os05g25720OsAffx.31069.2.S1_x_at1/115+14882761..14885793hypothetical protein
LOC_Os05g25740OsAffx.31869.1.S1_at9/115+14895338..14896447retrotransposon protein, putative, unclassified
LOC_Os05g25740OsAffx.31869.5.S1_x_at7/115+14895338..14896447retrotransposon protein, putative, unclassified
LOC_Os05g25740OsAffx.31869.2.S1_at1/115+14895338..14896447retrotransposon protein, putative, unclassified
LOC_Os05g25740OsAffx.31869.3.S1_s_at1/115+14895338..14896447retrotransposon protein, putative, unclassified
LOC_Os05g25740OsAffx.31869.4.S1_x_at1/115+14895338..14896447retrotransposon protein, putative, unclassified
LOC_Os05g25750OsAffx.21161.1.S1_at1/115+14900481..14905053retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27013.1.S1_at--1023--9011Chr05:14878805..14878829 (25 bp)
TGCACCCAACTCTCAAGCAATGTGG
LOC_Os05g25710
OsAffx.27013.1.S1_at--789--8051Chr05:14878768..14878792 (25 bp)
GGAGATGGAGGTGAGCAGCGCAGGT
LOC_Os05g25710
OsAffx.27013.1.S1_at--671--1651Chr05:14878752..14878776 (25 bp)
AGCGCAGGTGGCGTCATCGAGCTCC
LOC_Os05g25710
OsAffx.27013.1.S1_at--608--1051Chr05:14878747..14878771 (25 bp)
AGGTGGCGTCATCGAGCTCCCAAGT
LOC_Os05g25710
OsAffx.27013.1.S1_at--1052--8411Chr05:14878717..14878741 (25 bp)
GGCCGTGGGATGTCGACAACGCCTC
LOC_Os05g25710
OsAffx.27013.1.S1_at--134--1831Chr05:14878549..14878723 (25 bp)
ACGCCTCCGTGGTAAGGATTTGCTC
LOC_Os05g25710
OsAffx.27013.1.S1_at--467--3811Chr05:14878545..14878719 (25 bp)
CTCCGTGGTAAGGATTTGCTCGTCT
LOC_Os05g25710
OsAffx.27013.1.S1_at--43--7831Chr05:14878539..14878559 (21 bp)
GGTAAGGATTTGCTCGTCTACACCA
LOC_Os05g25710
OsAffx.27013.1.S1_at--1025--9771Chr05:14878537..14878559 (23 bp)
TAAGGATTTGCTCGTCTACACCAAG
LOC_Os05g25710
OsAffx.27013.1.S1_at--324--7931Chr05:14878534..14878558 (25 bp)
GGATTTGCTCGTCTACACCAAGGAG
LOC_Os05g25710
OsAffx.27013.1.S1_at--921--10231Chr05:14878531..14878555 (25 bp)
TTTGCTCGTCTACACCAAGGAGTCT
LOC_Os05g25710
Target Sequence 
TGCACCCAACTCTCAAGCAATGTGGGGCTCCCGTGATGGAGATGGAGGTGAGCAGCGCAGGTGGCGTCATCGAGCTCCCA
AGTGGTGCGGCCGTGGGATGTCGACAACGCCTCCGTGGTAAGGATTTGCTCGTCTACACCAAGGAGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27013.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis