Browse Element(s) Details


Os.7949.1.S1_at

Description gb:AK061469.1
DB_XREF= gi:32971487
TID=Os.7949.1
CNT=29
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7949 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013135I03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-308-D06, full insert sequence.
FL= gb:AK061469.1 gb:AK099034.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2402011/1150S ribosomal protein L6, putative, expressed
LOC_Os05g257001/11WRKY DNA binding domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g23960OsAffx.12998.1.S1_at11/113+13581669..13584129IQ calmodulin-binding motif family protein, expressed
LOC_Os03g23960OsAffx.12998.1.S1_x_at11/113+13581669..13584129IQ calmodulin-binding motif family protein, expressed
LOC_Os03g23960Os.16214.1.S1_at1/113+13581669..13584129IQ calmodulin-binding motif family protein, expressed
LOC_Os03g23970Os.48046.1.S1_at11/113+13584309..13586918diphthine synthase, putative, expressed
LOC_Os03g23980Os.12615.1.A1_at11/113+13587728..13590913NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os03g23990NANA3+13593871..13596424transposon protein, putative, unclassified
LOC_Os03g24000OsAffx.20387.1.S1_x_at2/113+13597144..13598570retrotransposon protein, putative, unclassified
LOC_Os03g24010Os.25754.2.S1_x_at1/113+13599323..13602221hypothetical protein
LOC_Os03g24020Os.7949.1.S1_at11/113+13606394..1360916550S ribosomal protein L6, putative, expressed
LOC_Os03g24030NANA3+13610212..13610899Glutaredoxin family protein, expressed
LOC_Os03g24040Os.23413.1.A1_at10/113+13612561..13616323Ubiquitin ligase SINAT5, putative, expressed
LOC_Os03g24050Os.54844.1.S1_at1/113+13628883..13634122hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0006412biological_processprotein biosynthesis
GO:0005730cellular_componentnucleolus
GO:0015934cellular_componentlarge ribosomal subunit
GO:0003700molecular_functiontranscription factor activity
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7949.1.S1_at--789--6151Chr03:13606868..13606892 (25 bp)
GATGAACCTGGGATTTTCGCACCCG
LOC_Os03g24020
Os.7949.1.S1_at--566--7831Chr03:13606756..13606780 (25 bp)
GGTCAATTCGCTGCTTCCATAAAGA
LOC_Os03g24020
Os.7949.1.S1_at--1147--7491Chr03:13606730..13606754 (25 bp)
GTGGAGGCCGCCTGAACCATACAAG
LOC_Os03g24020
Os.7949.1.S1_at--712--10011Chr03:13606639..13606663 (25 bp)
TAGAAACCGAGTCTTTGTTGTACTT
LOC_Os03g24020
Os.7949.1.S1_at--1110--6992Chr10:21330030..21330052 (22 bp)
GTACTTTGGGTTTCATACTTCATTC
NONE
Os.7949.1.S1_at--860--6271Chr03:13606583..13606607 (25 bp)
GATGTAATCCCTCTCTTATTTTGTG
LOC_Os03g24020
Os.7949.1.S1_at--572--10571Chr03:13606526..13606550 (25 bp)
TTCTTTGGATCTTCCGTGACTTGTA
LOC_Os03g24020
Os.7949.1.S1_at--614--6811Chr03:13606478..13606502 (25 bp)
GTTTTCATCAACACATGGTCTGCTT
LOC_Os03g24020
Os.7949.1.S1_at--788--7791Chr03:13606462..13606486 (25 bp)
GGTCTGCTTAGCGTGATTGCGATGC
LOC_Os03g24020
Os.7949.1.S1_at--728--71Chr03:13606447..13606471 (25 bp)
ATTGCGATGCTACCAAGAACTCCCA
LOC_Os03g24020
Os.7949.1.S1_at--422--5472Chr05:14871758..14872185 (25 bp)
GAACTCCCAGCAACATATATACATG
LOC_Os05g25700
Target Sequence 
GATGAACCTGGGATTTTCGCACCCGGTTCGGATGGCTGTTCCAGAAGGCCTGAAAGTTAAGGTGGAAGAGAACACCAGGA
TCATTGTGAGTGGCTACGACAAGAGCGAGATCGGTCAATTCGCTGCTTCCATAAAGAAGTGGAGGCCGCCTGAACCATAC
AAGGGGAAGGGCATCCGGTATGCCGATGAGATCGTCAGAAGAAAGGAGGGCAAGGCTGGGAAGAAGAAATAGAAACCGAG
TCTTTGTTGTACTTTGGGTTTCATACTTCATTCAATTTTTTTTCCGATGTAATCCCTCTCTTATTTTGTGAAGAAGAAAC
CAAACCAGTAAGAAAGAACATGTTCTTTGGATCTTCCGTGACTTGTAGAGATGCGATGAAACATGAAACTGTTTTCATCA
ACACATGGTCTGCTTAGCGTGATTGCGATGCTACCAAGAACTCCCAGCAACATATATACATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7949.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis