Browse Element(s) Details


Os.48046.1.S1_at

Description gb:AK103902.1
DB_XREF= gi:32989111
TID=Os.48046.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.48046 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033150L03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033150L03, full insert sequence.
FL= gb:AK069271.1 gb:AK103902.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2397011/11diphthine synthase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g23929Os.18521.1.A1_at6/113+13559464..13563099U4/U6 small nuclear ribonucleoprotein PRP4, putative, expressed
LOC_Os03g23940OsAffx.25201.1.S1_s_at11/113+13564078..13565271expressed protein
LOC_Os03g23950Os.5414.1.S1_at11/113+13565574..13571924Adapter-related protein complex 1 beta 1 subunit, putative, expressed
LOC_Os03g23950Os.52410.1.S1_x_at5/113+13565574..13571924Adapter-related protein complex 1 beta 1 subunit, putative, expressed
LOC_Os03g23960OsAffx.12998.1.S1_at11/113+13581669..13584129IQ calmodulin-binding motif family protein, expressed
LOC_Os03g23960OsAffx.12998.1.S1_x_at11/113+13581669..13584129IQ calmodulin-binding motif family protein, expressed
LOC_Os03g23960Os.16214.1.S1_at1/113+13581669..13584129IQ calmodulin-binding motif family protein, expressed
LOC_Os03g23970Os.48046.1.S1_at11/113+13584309..13586918diphthine synthase, putative, expressed
LOC_Os03g23980Os.12615.1.A1_at11/113+13587728..13590913NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os03g23990NANA3+13593871..13596424transposon protein, putative, unclassified
LOC_Os03g24000OsAffx.20387.1.S1_x_at2/113+13597144..13598570retrotransposon protein, putative, unclassified
LOC_Os03g24010Os.25754.2.S1_x_at1/113+13599323..13602221hypothetical protein
LOC_Os03g24020Os.7949.1.S1_at11/113+13606394..1360916550S ribosomal protein L6, putative, expressed
LOC_Os03g24030NANA3+13610212..13610899Glutaredoxin family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0017183biological_processpeptidyl-diphthamide biosynthesis from peptidyl-histidine
GO:0004164molecular_functiondiphthine synthase activity
GO:0008168molecular_functionmethyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48046.1.S1_at--759--2031Chr03:13584972..13584996 (25 bp)
ACTATGCATAGGTGTTGCTCGCCTT
LOC_Os03g23970
Os.48046.1.S1_at--618--1451Chr03:13584934..13584958 (25 bp)
AGAAGATCGTCGCTGGACCTATGAA
LOC_Os03g23970
Os.48046.1.S1_at--864--2511Chr03:13584907..13584931 (25 bp)
AACTACTAGATGTCGATTTCGGCCC
LOC_Os03g23970
Os.48046.1.S1_at--559--4891Chr03:13584649..13584813 (25 bp)
GCTTTTATGGCCTTGTAGCTGGATA
LOC_Os03g23970
Os.48046.1.S1_at--955--6471Chr03:13584628..13584652 (25 bp)
GATACATGATCCCAGGCTTATAGCT
LOC_Os03g23970
Os.48046.1.S1_at--313--4891Chr03:13584613..13584637 (25 bp)
GCTTATAGCTCCCTTGAAACGATAC
LOC_Os03g23970
Os.48046.1.S1_at--235--5551Chr03:13584598..13584622 (25 bp)
GAAACGATACTTCGATGCTTCCGCC
LOC_Os03g23970
Os.48046.1.S1_at--1140--6811Chr03:13584548..13584572 (25 bp)
GTTTACTGCTCCAATTGTTGCTCAT
LOC_Os03g23970
Os.48046.1.S1_at--483--1951Chr03:13584512..13584536 (25 bp)
ACTGGGATCAGCTGTTGTTCTTTTT
LOC_Os03g23970
Os.48046.1.S1_at--1019--10231Chr03:13584488..13584512 (25 bp)
TTTGGCCTGATACCGAATACTCTCA
LOC_Os03g23970
Os.48046.1.S1_at--543--7831Chr03:13584369..13584393 (25 bp)
GGTTACCGGAACATTAGCTACAATT
LOC_Os03g23970
Target Sequence 
ACTATGCATAGGTGTTGCTCGCCTTGGAAGTGATGATCAGAAGATCGTCGCTGGACCTATGAAGAAACTACTAGATGTCG
ATTTCGGCCCACCCCTTCACTGCCTTATCATAGTGGGAGAGACGCATCCTGTGGAAGAAGAGATGATAGAATTCCACATG
ATCAAGTCATGATGAATGAAAGTGCTTTTATGGCCTTGTAGCTGGATACATGATCCCAGGCTTATAGCTCCCTTGAAACG
ATACTTCGATGCTTCCGCCCGCCGTGAAAGGTCCACCAGTAGTAGTTTACTGCTCCAATTGTTGCTCATTTTTAAGTTAA
ACTGGGATCAGCTGTTGTTCTTTTTTTGGCCTGATACCGAATACTCTCAAACCAGTATTGAACCTTGTTTACATTGTGTG
AGCTCATATTTGAATGTGTTCGTGCATAAANCACCTTGAGATCAATGTTACTCATCAAGAAACGGTTACCGGAACATTAG
CTACAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48046.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis