Browse Element(s) Details


Os.16214.1.S1_at

Description gb:AK109321.1
DB_XREF= gi:32994530
TID=Os.16214.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.16214 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-188-H02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-188-H02, full insert sequence.
FL= gb:AK109321.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0549011/11expressed protein
LOC_Os03g239601/11IQ calmodulin-binding motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g05470Os.49726.1.S1_at11/1111+2448429..2450007CEN-like protein 2, putative, expressed
LOC_Os11g05480Os.49126.1.S1_at10/1111+2458323..2464637Transcription factor HBP-1b, putative, expressed
LOC_Os11g05490Os.16214.1.S1_at11/1111+2472570..2473367expressed protein
LOC_Os11g05500OsAffx.30828.1.S1_at11/1111+2479882..2480121hypothetical protein
LOC_Os11g05510NANA11+2484109..2484526tuber storage protein, putative
LOC_Os11g05520Os.54903.1.S1_at2/1111+2485289..2485837Eukaryotic-type carbonic anhydrase family protein, expressed
LOC_Os11g05530Os.51005.1.S1_at11/1111+2486586..2487649expressed protein
LOC_Os11g05540Os.21289.1.S1_at11/1111+2496341..2501137rac GTPase activating protein 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16214.1.S1_at--152--631Chr11:2473007..2473031 (25 bp)
ATGCTGCACAAGGATGGCGTCTCTC
LOC_Os11g05490
Os.16214.1.S1_at--602--2111Chr11:2472976..2473000 (25 bp)
ACATGGTTTCGCTGATGCAGAGAGA
LOC_Os11g05490
Os.16214.1.S1_at--66--5191Chr11:2472950..2472974 (25 bp)
GCAAGTGAGCAGGAGATGATCAGCT
LOC_Os11g05490
Os.16214.1.S1_at--77--6451Chr11:2472933..2472957 (25 bp)
GATCAGCTGCAGAGGGTGGCGACCT
LOC_Os11g05490
Os.16214.1.S1_at--1151--7531Chr11:2472918..2472942 (25 bp)
GTGGCGACCTGCCTTGAAGAGCATA
LOC_Os11g05490
Os.16214.1.S1_at--377--8271Chr11:2472887..2472911 (25 bp)
GGCAGTGATTGTTAGCTACTAGTAC
LOC_Os11g05490
Os.16214.1.S1_at--1135--271Chr11:2472736..2472760 (25 bp)
ATAGGTATATATATGCTCAACAGAT
LOC_Os11g05490
Os.16214.1.S1_at--126--1311Chr11:2472658..2472682 (25 bp)
AGATGAGGATTCTCTTTATCTTTTC
LOC_Os11g05490
Os.16214.1.S1_at--240--10392Chr03:13582367..13582837 (25 bp)
TTTTCTTTTTGGACACATGCACATG
LOC_Os03g23960
Os.16214.1.S1_at--806--10231Chr11:2472631..2472655 (25 bp)
TTTGGACACATGCACATGGATGCAT
LOC_Os11g05490
Os.16214.1.S1_at--541--8231Chr11:2472591..2472612 (22 bp)
GGCAAGATGATCCTAGAAATTAATT
LOC_Os11g05490
Target Sequence 
ATGCTGCACAAGGATGGCGTCTCTCTTGACNGACATGGTTTCGCTGATGCAGAGAGAAGCAAGTGAGCAGGAGATGATCA
GCTGCAGAGGGTGGCGACCTGCCTTGAAGAGCATANCCAGAAGGCAGTGATTGTTAGCTACTAGTACATAATTAATTAAT
TAATTAATTATACTTAACTAGTTCAATATATATACAAGATATATTAGCTAGACNTGCTAGAGTTATACTAGTAGATGTTT
TGGAATAAGTGAAAGAAATATCTAGCNTAGGACCATAGGTATATATATGCTCAACAGATACATGTAAATATGGAGATAGA
TATGGTGTANCCACTTAAAAAAAAGTTTTGAGAGATGAGGATTCTCTTTATCTTTTCTTTTTGGACACATGCACATGGAT
GCATGGTTGTAAAGAAAAGGCAAGATGATCCTAGAAATTAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16214.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis