Browse Element(s) Details


Os.54903.1.S1_at

Description gb:AK107061.1
DB_XREF= gi:32992270
TID=Os.54903.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54903 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-121-E01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-121-E01, full insert sequence.
FL= gb:AK107061.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g055202/11Eukaryotic-type carbonic anhydrase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g05480Os.49126.1.S1_at10/1111+2458323..2464637Transcription factor HBP-1b, putative, expressed
LOC_Os11g05490Os.16214.1.S1_at11/1111+2472570..2473367expressed protein
LOC_Os11g05500OsAffx.30828.1.S1_at11/1111+2479882..2480121hypothetical protein
LOC_Os11g05510NANA11+2484109..2484526tuber storage protein, putative
LOC_Os11g05520Os.54903.1.S1_at2/1111+2485289..2485837Eukaryotic-type carbonic anhydrase family protein, expressed
LOC_Os11g05530Os.51005.1.S1_at11/1111+2486586..2487649expressed protein
LOC_Os11g05540Os.21289.1.S1_at11/1111+2496341..2501137rac GTPase activating protein 1, putative, expressed
LOC_Os11g05550Os.55491.1.S1_at11/1111+2502845..2504306expressed protein
LOC_Os11g05550Os.51098.1.S1_x_at1/1111+2502845..2504306expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006730biological_processone-carbon compound metabolism
GO:0004089molecular_functioncarbonate dehydratase activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54903.1.S1_at--518--1791Chr11:2485664..2485688 (25 bp)
ACCGAGGACGTCTTCTGGAGCGTGC
LOC_Os11g05520
Os.54903.1.S1_at--478--1631Chr11:2485682..2485706 (25 bp)
AGCGTGCTCGGCAAGATCAGGCAGA
LOC_Os11g05520
Os.54903.1.S1_at--1103--9231Chr11:2485823..2485847 (25 bp)
TCCTTCAAGGTCTAGTAGCCCCAGG
NONE
Os.54903.1.S1_at--122--8311Chr11:2485855..2485879 (25 bp)
GGCTTTGGCCCATTTATATATACTA
NONE
Os.54903.1.S1_at--294--10191Chr11:2485878..2485902 (25 bp)
TATATGGGTTGCATTGGGCTGCACA
NONE
Os.54903.1.S1_at--1073--6991Chr11:2485971..2485995 (25 bp)
GTACTGTTGCTTAGATAGGCCCTTA
NONE
Os.54903.1.S1_at--1092--6491Chr11:2485984..2486008 (25 bp)
GATAGGCCCTTATCTATAGTATAGT
NONE
Os.54903.1.S1_at--201--2411Chr11:2486043..2486067 (25 bp)
AAACATGGTTGCTTATCCTCACTTG
NONE
Os.54903.1.S1_at--689--2851Chr11:2486083..2486107 (25 bp)
AAGTCGAGCACATGTGCACTTGTTT
NONE
Os.54903.1.S1_at--222--10331Chr11:2486107..2486131 (25 bp)
TTTCATTCAAACATTAGCCTGTCGC
NONE
Os.54903.1.S1_at--440--9991Chr11:2486121..2486145 (25 bp)
TAGCCTGTCGCATAGATAGTCTTTT
NONE
Target Sequence 
ACCGAGGACGTCTTCTGGAGCGTGCTCGGCAAGATCAGGCAGATCAGCCAGGAGCAGGTCGCCCTCATCACCGCGCTGCT
CCCCGCCGGCGGCGCGAGGCCGACGCAGCCGCTCAACGGCCGCACCGTGCAGTTCTACAACCCGCCCAACAGCACCATCT
CCTTCAAGGTCTAGTAGCCCCAGGCCCAATGGGCTTTGGCCCATTTATATATACTATATGGGTTGCATTGGGCTGCACAG
GCCCTGAAATTGATTGAAGGATCTCAATTTTTGAGATTTTTCTTGTTTCTGGAGAGAAAAATTCATGTACTGTTGCTTAG
ATAGGCCCTTATCTATAGTATAGTAACATATGTATATGAATTTAATTTTAGGATTTGGAAACATGGTTGCTTATCCTCAC
TTGGAATTAGGCTTTTAAAAGTCGAGCACATGTGCACTTGTTTTTCATTCAAACATTAGCCTGTCGCATAGATAGTCTTT
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54903.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis