Browse Element(s) Details


Os.12615.1.A1_at

Description gb:CB624404
DB_XREF= gi:29619392
DB_XREF=OSIIEa12P08.r
CLONE=OSIIEa12P08
TID=Os.12615.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.12615 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_194881.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2398011/11NAD dependent epimerase/dehydratase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g23929Os.18521.1.A1_at6/113+13559464..13563099U4/U6 small nuclear ribonucleoprotein PRP4, putative, expressed
LOC_Os03g23940OsAffx.25201.1.S1_s_at11/113+13564078..13565271expressed protein
LOC_Os03g23950Os.5414.1.S1_at11/113+13565574..13571924Adapter-related protein complex 1 beta 1 subunit, putative, expressed
LOC_Os03g23950Os.52410.1.S1_x_at5/113+13565574..13571924Adapter-related protein complex 1 beta 1 subunit, putative, expressed
LOC_Os03g23960OsAffx.12998.1.S1_at11/113+13581669..13584129IQ calmodulin-binding motif family protein, expressed
LOC_Os03g23960OsAffx.12998.1.S1_x_at11/113+13581669..13584129IQ calmodulin-binding motif family protein, expressed
LOC_Os03g23960Os.16214.1.S1_at1/113+13581669..13584129IQ calmodulin-binding motif family protein, expressed
LOC_Os03g23970Os.48046.1.S1_at11/113+13584309..13586918diphthine synthase, putative, expressed
LOC_Os03g23980Os.12615.1.A1_at11/113+13587728..13590913NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os03g23990NANA3+13593871..13596424transposon protein, putative, unclassified
LOC_Os03g24000OsAffx.20387.1.S1_x_at2/113+13597144..13598570retrotransposon protein, putative, unclassified
LOC_Os03g24010Os.25754.2.S1_x_at1/113+13599323..13602221hypothetical protein
LOC_Os03g24020Os.7949.1.S1_at11/113+13606394..1360916550S ribosomal protein L6, putative, expressed
LOC_Os03g24030NANA3+13610212..13610899Glutaredoxin family protein, expressed
LOC_Os03g24040Os.23413.1.A1_at10/113+13612561..13616323Ubiquitin ligase SINAT5, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12615.1.A1_at--40--5991Chr03:13588953..13588977 (25 bp)
GAGACTGGTTCTGGTGTCATCCATC
LOC_Os03g23980
Os.12615.1.A1_at--401--7751Chr03:13588941..13588965 (25 bp)
GGTGTCATCCATCGGCGTTACAAAA
LOC_Os03g23980
Os.12615.1.A1_at--84--5251Chr03:13588556..13588580 (25 bp)
GAATCTGTTTGGTGTGCTTAAGTAC
LOC_Os03g23980
Os.12615.1.A1_at--706--10251Chr03:13588513..13588537 (25 bp)
TTTGTCCAGAACTCAGGCATACCTT
LOC_Os03g23980
Os.12615.1.A1_at--861--8271Chr03:13588499..13588522 (24 bp)
GGCATACCTTTCACCATCATAAGGC
LOC_Os03g23980
Os.12615.1.A1_at--1060--7891Chr03:13588396..13588420 (25 bp)
GGAGATTAACCGATGGACCCTACAC
LOC_Os03g23980
Os.12615.1.A1_at--313--5811Chr03:13588381..13588405 (25 bp)
GACCCTACACTTCTTATGACCTTAA
LOC_Os03g23980
Os.12615.1.A1_at--380--671Chr03:13588366..13588390 (25 bp)
ATGACCTTAACACACTTCTTCAAGC
LOC_Os03g23980
Os.12615.1.A1_at--415--7731Chr03:13588190..13588214 (25 bp)
GGTGGCAGAAGCCTGTATCCAAGCT
LOC_Os03g23980
Os.12615.1.A1_at--378--2911Chr03:13587918..13587942 (25 bp)
AAGGAGCTGTTCAGAGCTGTTCAAT
LOC_Os03g23980
Os.12615.1.A1_at--818--10471Chr03:13587889..13587913 (25 bp)
TTAATGGCATTAGCTCACCCTCATC
LOC_Os03g23980
Target Sequence 
GAGACTGGTTCTGGTGTCATCCATCGGCGTTACAAAATACAATGAACTACCATGGAGTATCATGAATCTGTTTGGTGTGC
TTAAGTACAAGAAGATGGCAGAGGACTTTGTCCAGAACTCAGGCATACCTTTCACCATCATAAGGCCTGGGAGATTAACC
GATGGACCCTACACTTCTTATGACCTTAACACACTTCTTCAAGCTACTGCTGGAGAAAGACGGGCAGTTGTCATGGGCGA
AGGTGACAAGCTTGTGGGAGAAGCAAGCAGACTGGTGGTGGCAGAAGCCTGTATCCAAGCTTTGGATATTGAATTCACAG
AAGGACAAATATACGAGATCAACTCGGTGAAGGGCGAAGGACCTGGGAGCGACCCAGAGAAATGGAAGGAGCTGTTCAGA
GCTGTTCAATGAAATTAATGGCATTAGCTCACCCTCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12615.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis