Browse Element(s) Details


Os.52410.1.S1_x_at

Description gb:AK066946.1
DB_XREF= gi:32976964
TID=Os.52410.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52410 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013089G05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013089G05, full insert sequence.
FL= gb:AK066946.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g239505/11Adapter-related protein complex 1 beta 1 subunit, putative, expressed
LOC_Os03g632101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g23900Os.4781.1.S1_a_at11/113+13544217..13546530expressed protein
LOC_Os03g23909Os.18521.1.A1_at11/113+13549836..13553678U4/U6 small nuclear ribonucleoprotein PRP4, putative, expressed
LOC_Os03g23920Os.4781.1.S1_a_at11/113+13553736..13556144expressed protein
LOC_Os03g23929Os.18521.1.A1_at6/113+13559464..13563099U4/U6 small nuclear ribonucleoprotein PRP4, putative, expressed
LOC_Os03g23940OsAffx.25201.1.S1_s_at11/113+13564078..13565271expressed protein
LOC_Os03g23950Os.5414.1.S1_at11/113+13565574..13571924Adapter-related protein complex 1 beta 1 subunit, putative, expressed
LOC_Os03g23950Os.52410.1.S1_x_at5/113+13565574..13571924Adapter-related protein complex 1 beta 1 subunit, putative, expressed
LOC_Os03g23960OsAffx.12998.1.S1_at11/113+13581669..13584129IQ calmodulin-binding motif family protein, expressed
LOC_Os03g23960OsAffx.12998.1.S1_x_at11/113+13581669..13584129IQ calmodulin-binding motif family protein, expressed
LOC_Os03g23960Os.16214.1.S1_at1/113+13581669..13584129IQ calmodulin-binding motif family protein, expressed
LOC_Os03g23970Os.48046.1.S1_at11/113+13584309..13586918diphthine synthase, putative, expressed
LOC_Os03g23980Os.12615.1.A1_at11/113+13587728..13590913NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os03g23990NANA3+13593871..13596424transposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0030276molecular_functionclathrin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52410.1.S1_x_at--130--7191Chr10:16676151..16676175 (25 bp)
GTCGGTGATGTTGCCGGAACTCCTC
NONE
Os.52410.1.S1_x_at--1104--4511Chr10:16676205..16676229 (25 bp)
GCCGCTTCGAGTTCATGGGACACTA
NONE
Os.52410.1.S1_x_at--378--3336Chr12:24891606..24891627 (22 bp)
CACTAGAGAGAGGAGCACGAGCCCC
NONE
Os.52410.1.S1_x_at--863--1312Chr10:16676329..16676353 (25 bp)
AGATGGTGGCTCTCTTCTTCGAAGC
NONE
Os.52410.1.S1_x_at--698--2652Chr10:16676350..16676374 (25 bp)
AAGCCATGGAGTCTCTTCTCAAGTG
NONE
Os.52410.1.S1_x_at--1062--7952Chr10:16676388..16676412 (25 bp)
GGATCATTGTTCCTTCCAAATTGAT
NONE
Os.52410.1.S1_x_at--837--5911Chr10:16676421..16676445 (25 bp)
GAGCTATCGTAGATATGGATGCGGC
NONE
Os.52410.1.S1_x_at--598--6332Chr10:16676438..16676462 (25 bp)
GATGCGGCGTTGTTTCACAGGAGCT
NONE
Os.52410.1.S1_x_at--216--2131Chr10:16676454..16676478 (25 bp)
ACAGGAGCTGGTGTGAATTGTATCT
NONE
Os.52410.1.S1_x_at--496--51Chr10:16676470..16676494 (25 bp)
ATTGTATCTGTTGTTCTTTGTATTA
NONE
Os.52410.1.S1_x_at--624--2512Chr10:16676509..16676533 (25 bp)
AACTGCTAGTTTCCTGGTTTCAAAG
NONE
Target Sequence 
GTCGGTGATGTTGCCGGAACTCCTCCCCGCCTCGCCTCCGGCTTCTCCTCCGCCGCCGCTTCGAGTTCATGGGACACTAG
AGAGAGGAGCACGAGCCCCCTAGCCCCGCCGCGGATGGTGCTCGCGGAGGCGGCGCTGCGGCCGTGGCCGGCGGCGGAAC
CACGGGAGCTGAGGGTGGAGATGGTGGCTCTCTTCTTCGAAGCCATGGAGTCTCTTCTCAAGTGATACAAAATTGAAGGA
TCATTGTTCCTTCCAAATTGATTAGTTGATGAGCTATCGTAGATATGGATGCGGCGTTGTTTCACAGGAGCTGGTGTGAA
TTGTATCTGTTGTTCTTTGTATTAGATTACTGTATTTAAACTGCTAGTTTCCTGGTTTCAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52410.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis