Browse Element(s) Details


OsAffx.25201.1.S1_s_at

Description tigr:9631.m02338
TID=OsAffx.25201.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2394011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g23890NANA3+13539185..13539733retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g23900Os.4781.1.S1_a_at11/113+13544217..13546530expressed protein
LOC_Os03g23909Os.18521.1.A1_at11/113+13549836..13553678U4/U6 small nuclear ribonucleoprotein PRP4, putative, expressed
LOC_Os03g23920Os.4781.1.S1_a_at11/113+13553736..13556144expressed protein
LOC_Os03g23929Os.18521.1.A1_at6/113+13559464..13563099U4/U6 small nuclear ribonucleoprotein PRP4, putative, expressed
LOC_Os03g23940OsAffx.25201.1.S1_s_at11/113+13564078..13565271expressed protein
LOC_Os03g23950Os.5414.1.S1_at11/113+13565574..13571924Adapter-related protein complex 1 beta 1 subunit, putative, expressed
LOC_Os03g23950Os.52410.1.S1_x_at5/113+13565574..13571924Adapter-related protein complex 1 beta 1 subunit, putative, expressed
LOC_Os03g23960OsAffx.12998.1.S1_at11/113+13581669..13584129IQ calmodulin-binding motif family protein, expressed
LOC_Os03g23960OsAffx.12998.1.S1_x_at11/113+13581669..13584129IQ calmodulin-binding motif family protein, expressed
LOC_Os03g23960Os.16214.1.S1_at1/113+13581669..13584129IQ calmodulin-binding motif family protein, expressed
LOC_Os03g23970Os.48046.1.S1_at11/113+13584309..13586918diphthine synthase, putative, expressed
LOC_Os03g23980Os.12615.1.A1_at11/113+13587728..13590913NAD dependent epimerase/dehydratase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25201.1.S1_s_at--287--9391Chr03:13565047..13565071 (25 bp)
TCGATCGATCCACCGCCCGGGATGA
LOC_Os03g23940
OsAffx.25201.1.S1_s_at--1072--4151Chr03:13565060..13565084 (25 bp)
CGCCCGGGATGAGGCGCGAGCGATG
LOC_Os03g23940
OsAffx.25201.1.S1_s_at--963--8551Chr03:13565101..13565125 (25 bp)
TGGTTTTGAATGTTACTGTCCCAAT
LOC_Os03g23940
OsAffx.25201.1.S1_s_at--607--5271Chr03:13565108..13565132 (25 bp)
GAATGTTACTGTCCCAATTTTTTGG
LOC_Os03g23940
OsAffx.25201.1.S1_s_at--907--7691Chr03:13565133..13565157 (25 bp)
GGGTCAGGCTGAGTCAATCTACTAT
LOC_Os03g23940
OsAffx.25201.1.S1_s_at--689--7111Chr03:13565135..13565159 (25 bp)
GTCAGGCTGAGTCAATCTACTATTG
LOC_Os03g23940
OsAffx.25201.1.S1_s_at--933--8331Chr03:13565139..13565163 (25 bp)
GGCTGAGTCAATCTACTATTGTATT
LOC_Os03g23940
OsAffx.25201.1.S1_s_at--715--8891Chr03:13565142..13565166 (25 bp)
TGAGTCAATCTACTATTGTATTGCG
LOC_Os03g23940
OsAffx.25201.1.S1_s_at--1088--10691Chr03:13565162..13565186 (25 bp)
TTGCGAGAGCTCTGATTTCGTCAGA
LOC_Os03g23940
OsAffx.25201.1.S1_s_at--244--6011Chr03:13565166..13565190 (25 bp)
GAGAGCTCTGATTTCGTCAGATCTA
LOC_Os03g23940
OsAffx.25201.1.S1_s_at--880--1571Chr03:13565169..13565193 (25 bp)
AGCTCTGATTTCGTCAGATCTACTA
LOC_Os03g23940
Target Sequence 
TCGATCGATCCACCGCCCGGGATGAGGCGCGAGCGATGCGACGCCAACTAGTTTTGGTTTTGAATGTTACTGTCCCAATT
TTTTGGGGGTCAGGCTGAGTCAATCTACTATTGTATTGCGAGAGCTCTGATTTCGTCAGATCTACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25201.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis