Browse Element(s) Details


Os.5414.1.S1_at

Description gb:AK068938.1
DB_XREF= gi:32978962
TID=Os.5414.1
CNT=38
FEA=FLmRNA
TIER=FL+Stack
STK=9
UG=Os.5414 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023087B10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013169D19, full insert sequence.
FL= gb:AK068938.1 gb:AK059077.1 gb:AK069084.1 gb:AK071247.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2395011/11Adapter-related protein complex 1 beta 1 subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g23900Os.4781.1.S1_a_at11/113+13544217..13546530expressed protein
LOC_Os03g23909Os.18521.1.A1_at11/113+13549836..13553678U4/U6 small nuclear ribonucleoprotein PRP4, putative, expressed
LOC_Os03g23920Os.4781.1.S1_a_at11/113+13553736..13556144expressed protein
LOC_Os03g23929Os.18521.1.A1_at6/113+13559464..13563099U4/U6 small nuclear ribonucleoprotein PRP4, putative, expressed
LOC_Os03g23940OsAffx.25201.1.S1_s_at11/113+13564078..13565271expressed protein
LOC_Os03g23950Os.5414.1.S1_at11/113+13565574..13571924Adapter-related protein complex 1 beta 1 subunit, putative, expressed
LOC_Os03g23950Os.52410.1.S1_x_at5/113+13565574..13571924Adapter-related protein complex 1 beta 1 subunit, putative, expressed
LOC_Os03g23960OsAffx.12998.1.S1_at11/113+13581669..13584129IQ calmodulin-binding motif family protein, expressed
LOC_Os03g23960OsAffx.12998.1.S1_x_at11/113+13581669..13584129IQ calmodulin-binding motif family protein, expressed
LOC_Os03g23960Os.16214.1.S1_at1/113+13581669..13584129IQ calmodulin-binding motif family protein, expressed
LOC_Os03g23970Os.48046.1.S1_at11/113+13584309..13586918diphthine synthase, putative, expressed
LOC_Os03g23980Os.12615.1.A1_at11/113+13587728..13590913NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os03g23990NANA3+13593871..13596424transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0030276molecular_functionclathrin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5414.1.S1_at--441--6211Chr03:13566209..13566232 (24 bp)
GAGGCCTGGAAATCTTTACCTGATG
LOC_Os03g23950
Os.5414.1.S1_at--554--291Chr03:13566140..13566164 (25 bp)
ATAGATGCGACCGTTGAGCACCTTG
LOC_Os03g23950
Os.5414.1.S1_at--865--2291Chr03:13566108..13566132 (25 bp)
AAATGTGTTCTTTATCGCCAAGAGG
LOC_Os03g23950
Os.5414.1.S1_at--884--2911Chr03:13566071..13566095 (25 bp)
AAGGATGTTCTGTACATGTCTGCAA
LOC_Os03g23950
Os.5414.1.S1_at--189--771Chr03:13566056..13566080 (25 bp)
ATGTCTGCAAAGATTCCGCGTGGAA
LOC_Os03g23950
Os.5414.1.S1_at--558--8211Chr03:13566035..13566059 (25 bp)
GGAATCCCCTTCCTGATAGAGCTTA
LOC_Os03g23950
Os.5414.1.S1_at--265--10671Chr03:13565995..13566019 (25 bp)
TTCCTGGCGTGAAGTGTGCGGTCAA
LOC_Os03g23950
Os.5414.1.S1_at--529--5773Chr10:16676543..16676567 (25 bp)
GACGAACACTCGACATGGCCATTTT
NONE
Os.5414.1.S1_at--931--3491Chr03:13565729..13565753 (25 bp)
CATGGCCATTTTGTCTGCGTAATTT
LOC_Os03g23950
Os.5414.1.S1_at--1110--6871Chr03:13565704..13565728 (25 bp)
GTATATCTCGGACCTGAACCTCTTT
LOC_Os03g23950
Os.5414.1.S1_at--760--5431Chr03:13565689..13565713 (25 bp)
GAACCTCTTTTCATGCCATAGCATA
LOC_Os03g23950
Target Sequence 
GAGGCCTGGAAATCTTTACCTGATGACAACGAATTTTCGAAAGAGTTCCCCTCTTCTGTCGTCAGCAGCATAGATGCGAC
CGTTGAGCACCTTGCAGCATCAAATGTGTTCTTTATCGCCAAGAGGAAAAACTCAAACAAGGATGTTCTGTACATGTCTG
CAAAGATTCCGCGTGGAATCCCCTTCCTGATAGAGCTTACTGCTGCAGTCGGTGTTCCTGGCGTGAAGTGTGCGGTCAAA
ACTCCAAACAAGGAGATGGTGGCTCTCTTCTTCGAAGCCATGGAGTCTCTTCTCAAGTGATACAAAATTGAAGGATCATT
GTTCCTTCCAAATTGATCAGTTCATGAGCTATTGTAGGTTTGGATGCGGCGTTGTTTCACAGGAGCTGGTGTGAATTGTA
TTTGTTGTTCTTTGTATTAGATTACTGTATTTAAACTGCTAGTTTCCTGGTTTCAAAGTTTTTTCACGACGAACACTCGA
CATGGCCATTTTGTCTGCGTAATTTGTATATCTCGGACCTGAACCTCTTTTCATGCCATAGCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5414.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis