Browse Element(s) Details


Os.23413.1.A1_at

Description gb:AK058336.1
DB_XREF= gi:32968354
TID=Os.23413.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.23413 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-014-D03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-014-D03, full insert sequence.
FL= gb:AK058336.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2404010/11Ubiquitin ligase SINAT5, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g23980Os.12615.1.A1_at11/113+13587728..13590913NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os03g23990NANA3+13593871..13596424transposon protein, putative, unclassified
LOC_Os03g24000OsAffx.20387.1.S1_x_at2/113+13597144..13598570retrotransposon protein, putative, unclassified
LOC_Os03g24010Os.25754.2.S1_x_at1/113+13599323..13602221hypothetical protein
LOC_Os03g24020Os.7949.1.S1_at11/113+13606394..1360916550S ribosomal protein L6, putative, expressed
LOC_Os03g24030NANA3+13610212..13610899Glutaredoxin family protein, expressed
LOC_Os03g24040Os.23413.1.A1_at10/113+13612561..13616323Ubiquitin ligase SINAT5, putative, expressed
LOC_Os03g24050Os.54844.1.S1_at1/113+13628883..13634122hypothetical protein
LOC_Os03g24060Os.47911.1.S1_at1/113+13638491..13641604Tetratricopeptide repeat protein 11, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0007275biological_processdevelopment
GO:0005634cellular_componentnucleus
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23413.1.A1_at--50--9711Chr03:13612939..13612963 (25 bp)
TCAAATTGCGGGTCACTGGGAGAAT
LOC_Os03g24040
Os.23413.1.A1_at--1036--711Chr03:13612884..13612908 (25 bp)
ATGATCTGTTCATCGTTCTTAACCC
LOC_Os03g24040
Os.23413.1.A1_at--617--10531Chr03:13612869..13612893 (25 bp)
TTCTTAACCCTTGCATGAACCTATG
LOC_Os03g24040
Os.23413.1.A1_at--345--8991Chr03:13612854..13612878 (25 bp)
TGAACCTATGTATCATCACAGTGCG
LOC_Os03g24040
Os.23413.1.A1_at--697--4931Chr03:13612773..13612797 (25 bp)
GCTTGTTTTAGCTACCATCTTCTGT
LOC_Os03g24040
Os.23413.1.A1_at--729--9571Chr03:13612756..13612780 (25 bp)
TCTTCTGTTAGATTGGTGCCTGTGG
LOC_Os03g24040
Os.23413.1.A1_at--424--8251Chr03:13612700..13612724 (25 bp)
GGCACTATTGTAGAATTCCTGGCAA
LOC_Os03g24040
Os.23413.1.A1_at--140--2391Chr03:13612677..13612701 (25 bp)
AAACTTCTCTTTGCCTTGAACTGCT
LOC_Os03g24040
Os.23413.1.A1_at--157--5471Chr03:13612660..13612684 (25 bp)
GAACTGCTTGTTGAGTTGCCATTCT
LOC_Os03g24040
Os.23413.1.A1_at--251--6851Chr03:13612577..13612601 (25 bp)
GTTTCCAGCATATTTCTAGCTTCTT
LOC_Os03g24040
Os.23413.1.A1_at--896--1551Chr03:13612561..13612584 (24 bp)
AGCTTCTTTGTTCATTCTTTCAGCC
NONE
Target Sequence 
TCAAATTGCGGGTCACTGGGAGAATTTGGAAGGAACAGTGAAAATAAAATGTGAAATGATCTGTTCATCGTTCTTAACCC
TTGCATGAACCTATGTATCATCACAGTGCGAGAATTATAGCCATTCATAGGCAGTGACTCTAAAATGAAGACTTGTAATG
TTATTAGCTTGTTTTAGCTACCATCTTCTGTTAGATTGGTGCCTGTGGATGACTAGATGACAGTCATGTAGACCAGAGTG
GCACTATTGTAGAATTCCTGGCAAACTTCTCTTTGCCTTGAACTGCTTGTTGAGTTGCCATTCTGTGGTATAGGGAAATC
TAATGGCAATTCATGAGATGNATGTGTTGAACTCTTTTTCATGTTTCCAGCATATTTCTAGCTTCTTTGTTCATTCTTTC
AGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23413.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis