Browse Element(s) Details


Os.54844.1.S1_at

Description gb:AK106888.1
DB_XREF= gi:32992097
TID=Os.54844.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54844 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-118-G01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-118-G01, full insert sequence.
FL= gb:AK106888.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4380011/11expressed protein
LOC_Os02g436701/11Transferase family protein, expressed
LOC_Os03g240501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g43770Os.18433.1.S1_at11/115+25363694..25369207NLI interacting factor-like phosphatase family protein, expressed
LOC_Os05g43770Os.18433.1.S1_s_at10/115+25363694..25369207NLI interacting factor-like phosphatase family protein, expressed
LOC_Os05g43780OsAffx.27296.1.S1_at11/115+25370570..25373591hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os05g43790Os.26796.1.S1_at11/115+25375397..25378937Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed
LOC_Os05g43790Os.26796.2.S1_at11/115+25375397..25378937Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed
LOC_Os05g43800Os.54844.1.S1_at11/115+25381341..25383227expressed protein
LOC_Os05g43810OsAffx.26001.4.S1_at11/115+25383841..25388015hypothetical protein
LOC_Os05g43820Os.37828.1.S1_at11/115+25391593..25394975RAC-like GTP binding protein ARAC7, putative, expressed
LOC_Os05g43820Os.10032.1.S1_at11/115+25391593..25394975RAC-like GTP binding protein ARAC7, putative, expressed
LOC_Os05g43820Os.45896.1.S1_x_at5/115+25391593..25394975RAC-like GTP binding protein ARAC7, putative, expressed
LOC_Os05g43830Os.5650.1.S1_at9/115+25393874..25401165Proline iminopeptidase, putative, expressed
LOC_Os05g43830Os.10728.1.S1_at1/115+25393874..25401165Proline iminopeptidase, putative, expressed
LOC_Os05g43830Os.10719.1.S1_at1/115+25393874..25401165Proline iminopeptidase, putative, expressed
LOC_Os05g43840Os.12680.1.S1_at11/115+25406143..25408396CBL-interacting serine/threonine-protein kinase 15, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54844.1.S1_at--1101--7151Chr05:25381901..25381925 (25 bp)
GTCTCTTCGAGACGCAGTACATCGT
LOC_Os05g43800
Os.54844.1.S1_at--457--7111Chr05:25381878..25381902 (25 bp)
GTCAGCACCGAGAAATCCCAGGATA
LOC_Os05g43800
Os.54844.1.S1_at--910--8291Chr05:25381815..25381839 (25 bp)
GGCTTCTTCCTCAAACCAGAGTATT
LOC_Os05g43800
Os.54844.1.S1_at--229--3431Chr05:25381775..25381799 (25 bp)
CAGAGCAAGTAGTTCTAGGCTTCTA
LOC_Os05g43800
Os.54844.1.S1_at--83--931Chr05:25381759..25381783 (25 bp)
AGGCTTCTAGCCTCTAGCTGGGCAA
LOC_Os05g43800
Os.54844.1.S1_at--1151--1316Chr11:17182502..17182527 (25 bp)
ATTACACAGTTTTTCAACCTCCAGC
NONE
Os.54844.1.S1_at--703--2631Chr05:25381720..25381744 (25 bp)
AACCTCCAGCCATCTAGAGACATTT
LOC_Os05g43800
Os.54844.1.S1_at--687--3731Chr05:25381524..25381548 (25 bp)
CTAAGTGTGTTCTTCGATTCTTTCA
LOC_Os05g43800
Os.54844.1.S1_at--710--6571Chr05:25381509..25381533 (25 bp)
GATTCTTTCACTTGCTCTCAGGATT
LOC_Os05g43800
Os.54844.1.S1_at--825--6551Chr05:25381433..25381457 (25 bp)
GATTAGTTTGCACTTGCACCCAGTT
LOC_Os05g43800
Os.54844.1.S1_at--189--6871Chr05:25381411..25381435 (25 bp)
GTTTGTGCTGGCAATAGCTCTACTA
LOC_Os05g43800
Target Sequence 
GTCTCTTCGAGACGCAGTACATCGTCAGCACCGAGAAATCCCAGGATAGCCTGCGCCGCGGCAGCGGCGGCCTGCTTCAG
CAGCTCGGCTTCTTCCTCAAACCAGAGTATTCATGAGAGCATCGAGCAGAGCAAGTAGTTCTAGGCTTCTAGCCTCTAGC
TGGGCAATTACACAGTTTTTCAACCTCCAGCCATCTAGAGACATTTAGTTTATCATTCATGGTGAGAAAATTGAAGAGGG
TGCTCCGGGGTATCCATGGGTCTCGTGGGTGGGACCCTAGTCCCCCCTGCACCCACGTTGGATCCGCCCCTGGCTAAGAG
GAATGTAGGTATGTGTTCTTGTGAAATTGGGATGGAATGATGGATCATGATCATGATCTAAGTGTGTTCTTCGATTCTTT
CACTTGCTCTCAGGATTGCAAGCCTTGATTTGAGCAAGCTGTGTCAATGCGATGTAAATTAAACCATTGATTAGTTTGCA
CTTGCACCCAGTTTGTGCTGGCAATAGCTCTACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54844.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis