Browse Element(s) Details


Os.18433.1.S1_at

Description gb:BM421610
DB_XREF= gi:18388412
DB_XREF=V017C03
CLONE=V017C03
TID=Os.18433.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.18433 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_175986.1 (A.thaliana) unknown protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4377011/11NLI interacting factor-like phosphatase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g43730NANA5+25334531..25340487retrotransposon protein, putative, unclassified
LOC_Os05g43740NANA5+25341655..25344451retrotransposon protein, putative, unclassified
LOC_Os05g43750OsAffx.15089.1.S1_at7/115+25348637..25349321hypothetical protein
LOC_Os05g43760Os.5286.1.S1_at11/115+25353153..25355496TCP family transcription factor containing protein, expressed
LOC_Os05g43770Os.18433.1.S1_at11/115+25363694..25369207NLI interacting factor-like phosphatase family protein, expressed
LOC_Os05g43770Os.18433.1.S1_s_at10/115+25363694..25369207NLI interacting factor-like phosphatase family protein, expressed
LOC_Os05g43780OsAffx.27296.1.S1_at11/115+25370570..25373591hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os05g43790Os.26796.1.S1_at11/115+25375397..25378937Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed
LOC_Os05g43790Os.26796.2.S1_at11/115+25375397..25378937Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed
LOC_Os05g43800Os.54844.1.S1_at11/115+25381341..25383227expressed protein
LOC_Os05g43810OsAffx.26001.4.S1_at11/115+25383841..25388015hypothetical protein
LOC_Os05g43820Os.37828.1.S1_at11/115+25391593..25394975RAC-like GTP binding protein ARAC7, putative, expressed
LOC_Os05g43820Os.10032.1.S1_at11/115+25391593..25394975RAC-like GTP binding protein ARAC7, putative, expressed
LOC_Os05g43820Os.45896.1.S1_x_at5/115+25391593..25394975RAC-like GTP binding protein ARAC7, putative, expressed
LOC_Os05g43830Os.5650.1.S1_at9/115+25393874..25401165Proline iminopeptidase, putative, expressed
LOC_Os05g43830Os.10728.1.S1_at1/115+25393874..25401165Proline iminopeptidase, putative, expressed
LOC_Os05g43830Os.10719.1.S1_at1/115+25393874..25401165Proline iminopeptidase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0005743cellular_componentmitochondrial inner membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18433.1.S1_at--381--5231Chr05:25369090..25369114 (25 bp)
GAATATTTTCAGTGCTGTGCGTGCT
LOC_Os05g43770
Os.18433.1.S1_at--886--10371Chr05:25369095..25369119 (25 bp)
TTTTCAGTGCTGTGCGTGCTACTAC
LOC_Os05g43770
Os.18433.1.S1_at--1017--1111Chr05:25369100..25369124 (25 bp)
AGTGCTGTGCGTGCTACTACTAAAT
LOC_Os05g43770
Os.18433.1.S1_at--1112--7291Chr05:25369106..25369130 (25 bp)
GTGCGTGCTACTACTAAATTAGTTG
LOC_Os05g43770
Os.18433.1.S1_at--413--3131Chr05:25369122..25369146 (25 bp)
AATTAGTTGCATGCCAGTAGCTCTC
LOC_Os05g43770
Os.18433.1.S1_at--870--1231Chr05:25369126..25369150 (25 bp)
AGTTGCATGCCAGTAGCTCTCAGCA
LOC_Os05g43770
Os.18433.1.S1_at--578--591Chr05:25369132..25369156 (25 bp)
ATGCCAGTAGCTCTCAGCATGCGCT
LOC_Os05g43770
Os.18433.1.S1_at--302--6971Chr05:25369138..25369162 (25 bp)
GTAGCTCTCAGCATGCGCTGAAATT
LOC_Os05g43770
Os.18433.1.S1_at--292--3411Chr05:25369146..25369170 (25 bp)
CAGCATGCGCTGAAATTTTGCTTTC
LOC_Os05g43770
Os.18433.1.S1_at--15--2251Chr05:25369158..25369182 (25 bp)
AAATTTTGCTTTCTTGCATATTTGC
LOC_Os05g43770
Os.18433.1.S1_at--966--9071Chr05:25369164..25369188 (25 bp)
TGCTTTCTTGCATATTTGCTGATAA
LOC_Os05g43770
Target Sequence 
GAATATTTTCAGTGCTGTGCGTGCTACTACTAAATTAGTTGCATGCCAGTAGCTCTCAGCATGCGCTGAAATTTTGCTTT
CTTGCATATTTGCTGATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18433.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis