Browse Element(s) Details


OsAffx.27296.1.S1_at

Description tigr:9633.m04076
TID=OsAffx.27296.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to 93710-91881
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4378011/11hydroxyproline-rich glycoprotein family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g43750OsAffx.15089.1.S1_at7/115+25348637..25349321hypothetical protein
LOC_Os05g43760Os.5286.1.S1_at11/115+25353153..25355496TCP family transcription factor containing protein, expressed
LOC_Os05g43770Os.18433.1.S1_at11/115+25363694..25369207NLI interacting factor-like phosphatase family protein, expressed
LOC_Os05g43770Os.18433.1.S1_s_at10/115+25363694..25369207NLI interacting factor-like phosphatase family protein, expressed
LOC_Os05g43780OsAffx.27296.1.S1_at11/115+25370570..25373591hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os05g43790Os.26796.1.S1_at11/115+25375397..25378937Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed
LOC_Os05g43790Os.26796.2.S1_at11/115+25375397..25378937Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed
LOC_Os05g43800Os.54844.1.S1_at11/115+25381341..25383227expressed protein
LOC_Os05g43810OsAffx.26001.4.S1_at11/115+25383841..25388015hypothetical protein
LOC_Os05g43820Os.37828.1.S1_at11/115+25391593..25394975RAC-like GTP binding protein ARAC7, putative, expressed
LOC_Os05g43820Os.10032.1.S1_at11/115+25391593..25394975RAC-like GTP binding protein ARAC7, putative, expressed
LOC_Os05g43820Os.45896.1.S1_x_at5/115+25391593..25394975RAC-like GTP binding protein ARAC7, putative, expressed
LOC_Os05g43830Os.5650.1.S1_at9/115+25393874..25401165Proline iminopeptidase, putative, expressed
LOC_Os05g43830Os.10728.1.S1_at1/115+25393874..25401165Proline iminopeptidase, putative, expressed
LOC_Os05g43830Os.10719.1.S1_at1/115+25393874..25401165Proline iminopeptidase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27296.1.S1_at--89--9411Chr05:25372278..25372302 (25 bp)
TCGTACACCAAATGCATCCGCAAGT
LOC_Os05g43780
OsAffx.27296.1.S1_at--1147--2811Chr05:25372299..25372323 (25 bp)
AAGTACCCAGTTCATTTGGCTTGAG
LOC_Os05g43780
OsAffx.27296.1.S1_at--978--2191Chr05:25372328..25372352 (25 bp)
ACAAATGCTCCTCAACACATGTTGC
LOC_Os05g43780
OsAffx.27296.1.S1_at--29--731Chr05:25372131..25372473 (25 bp)
ATGTTTCATCCTGGTGGGAACCCAC
LOC_Os05g43780
OsAffx.27296.1.S1_at--449--7451Chr05:25372766..25372790 (25 bp)
GTGTCCAATGTTTAGTACCTACTGC
LOC_Os05g43780
OsAffx.27296.1.S1_at--684--6251Chr05:25373066..25373087 (22 bp)
GATGGGTAGTTCACATGCTGCCTCA
LOC_Os05g43780
OsAffx.27296.1.S1_at--800--4651Chr05:25373135..25373159 (25 bp)
GCGTGGTAACGCAGAAGCCTCTTCA
LOC_Os05g43780
OsAffx.27296.1.S1_at--1147--10631Chr05:25373193..25373217 (25 bp)
TTGCCCGGACAGATGACCCAAGGAA
LOC_Os05g43780
OsAffx.27296.1.S1_at--712--3171Chr05:25373216..25373240 (25 bp)
AATTGGTGGTATCCATTCGGCTCGC
LOC_Os05g43780
OsAffx.27296.1.S1_at--68--2731Chr05:25373245..25373362 (25 bp)
AAGCACCTTTGACGCCTGAGATGGA
LOC_Os05g43780
OsAffx.27296.1.S1_at--768--2831Chr05:25373380..25373404 (25 bp)
AAGTCTTGAGTATGTCACCTGACCA
LOC_Os05g43780
Target Sequence 
TCGTACACCAAATGCATCCGCAAGTACCCAGTTCATTTGGCTTGAGTCATACAAATGCTCCTCAACACATGTTGCAACAA
TCAATGTTTCATCCTGGTGGGAACCCACAAACTTCCTTCCTTACAGGTCAACCGCCATTGCCTAACCAGCCACCGCCATT
GCCTAACCAGCCACCACCCCAGCTATACCAGATCACAAGAGTTTTAGCTCTTGAAGTATCATGCAGATATAAGTATTGTG
TCCAATGTTTAGTACCTACTGCTATGATGGGTAGTTCACATGCTGCCTCACACTACAATTCTCAAAGTATGCAAATGGAT
AGATCAACTCCATGGGGGCGTGGTAACGCAGAAGCCTCTTCAGCTGGCACCCATTTCCCTGGGCATTTGCCTGGCTTGCC
CGGACAGATGACCCAAGGAATTGGTGGTATCCATTCGGCTCGCCCTGAAGCACCTTTGACGCCTGAGATGGAAAAGATGC
TTGTACAGCAAGTCTTGAGTATGTCACCTGACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27296.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis