Browse Element(s) Details


Os.5286.1.S1_at

Description gb:AK069938.1
DB_XREF= gi:32979962
TID=Os.5286.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5286 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023038I07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023038I07, full insert sequence.
FL= gb:AK069938.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4376011/11TCP family transcription factor containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g43720NANA5+25329588..25330037transposon protein, putative, unclassified
LOC_Os05g43730NANA5+25334531..25340487retrotransposon protein, putative, unclassified
LOC_Os05g43740NANA5+25341655..25344451retrotransposon protein, putative, unclassified
LOC_Os05g43750OsAffx.15089.1.S1_at7/115+25348637..25349321hypothetical protein
LOC_Os05g43760Os.5286.1.S1_at11/115+25353153..25355496TCP family transcription factor containing protein, expressed
LOC_Os05g43770Os.18433.1.S1_at11/115+25363694..25369207NLI interacting factor-like phosphatase family protein, expressed
LOC_Os05g43770Os.18433.1.S1_s_at10/115+25363694..25369207NLI interacting factor-like phosphatase family protein, expressed
LOC_Os05g43780OsAffx.27296.1.S1_at11/115+25370570..25373591hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os05g43790Os.26796.1.S1_at11/115+25375397..25378937Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed
LOC_Os05g43790Os.26796.2.S1_at11/115+25375397..25378937Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0048366biological_processleaf development
GO:0009507cellular_componentchloroplast
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5286.1.S1_at--932--91Chr05:25354921..25354945 (25 bp)
ATTCGCCGTGAAAGAGGCTGCAGCC
LOC_Os05g43760
Os.5286.1.S1_at--454--8751Chr05:25354957..25354981 (25 bp)
TGTAGATAGCCTCGACCACTCGCAA
LOC_Os05g43760
Os.5286.1.S1_at--77--2011Chr05:25354974..25354998 (25 bp)
ACTCGCAAGGGCAGCTCACACTGAG
LOC_Os05g43760
Os.5286.1.S1_at--441--9731Chr05:25355061..25355085 (25 bp)
TAATCCCTACTCCAATAAGGCTGGT
LOC_Os05g43760
Os.5286.1.S1_at--1079--2011Chr05:25355117..25355141 (25 bp)
ACTTCGTTTGTTGTTCCATTTTCAG
LOC_Os05g43760
Os.5286.1.S1_at--881--6691Chr05:25355129..25355153 (25 bp)
GTTCCATTTTCAGGTGTGTGTTTAA
LOC_Os05g43760
Os.5286.1.S1_at--731--9791Chr05:25355180..25355204 (25 bp)
TAAGCGCATTATTTGGTACGGCCAG
LOC_Os05g43760
Os.5286.1.S1_at--1019--5471Chr05:25355221..25355245 (25 bp)
GAACTACTTAATTACAGCATGCAAA
LOC_Os05g43760
Os.5286.1.S1_at--361--8091Chr05:25355385..25355409 (25 bp)
GGAGCCTAGCTTTTAACCTTGAGTT
LOC_Os05g43760
Os.5286.1.S1_at--272--3171Chr05:25355432..25355456 (25 bp)
AATTGAGCTGCATGTATCCGACTTA
LOC_Os05g43760
Os.5286.1.S1_at--843--7431Chr05:25355461..25355485 (25 bp)
GTGTATCTTTTGCAAGCTAGCTAGC
LOC_Os05g43760
Target Sequence 
ATTCGCCGTGAAAGAGGCTGCAGCCGAGCAGTNNCCTGTAGATAGCCTCGACCACTCGCAAGGGCAGCTCACACTGAGCT
CAGCAAGAAGCTTCCNTCACNTCTGGAAGCCAGGGATGATTTGATCAATTACAAGAGACAATAATCCCTACTCCAATAAG
GCTGGTACGTTAGAACAAATTAAAAAAAATTCTAATAACTTCGTTTGTTGTTCCATTTTCAGGTGTGTGTTTAAGGTTGT
GATCAATTTGGTATTTTATTTAAGCGCATTATTTGGTACGGCCAGATGATTAAGAGTTCTAGAACTACTTAATTACAGCA
TGCAAAAGTTAAAATTCAAGGTTTTGCAGGGTGTGCGATATGCAATTCGNTTGCTTCTTCTTTTCTTTTCTTTTATATAT
ATATATGGAGGTAATTAATTGTTGGTGTATTATTTTGTCTTGTGTAATAACGATTTGAGNAATTTTGGAGCCTAGCTTTT
AACCTTGAGTTTCTTTTGTGAATTTTGCTTCTGAATTGAGCTGCATGTATCCGACTTAAATAGTGTATCTTTTGCAAGCT
AGCTAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5286.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis