Browse Element(s) Details


Os.26796.2.S1_at

Description gb:AK121638.1
DB_XREF= gi:37991261
TID=Os.26796.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26796 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023012B05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033052K11, full insert sequence.
FL= gb:AK121638.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4379011/11Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g43760Os.5286.1.S1_at11/115+25353153..25355496TCP family transcription factor containing protein, expressed
LOC_Os05g43770Os.18433.1.S1_at11/115+25363694..25369207NLI interacting factor-like phosphatase family protein, expressed
LOC_Os05g43770Os.18433.1.S1_s_at10/115+25363694..25369207NLI interacting factor-like phosphatase family protein, expressed
LOC_Os05g43780OsAffx.27296.1.S1_at11/115+25370570..25373591hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os05g43790Os.26796.1.S1_at11/115+25375397..25378937Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed
LOC_Os05g43790Os.26796.2.S1_at11/115+25375397..25378937Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed
LOC_Os05g43800Os.54844.1.S1_at11/115+25381341..25383227expressed protein
LOC_Os05g43810OsAffx.26001.4.S1_at11/115+25383841..25388015hypothetical protein
LOC_Os05g43820Os.37828.1.S1_at11/115+25391593..25394975RAC-like GTP binding protein ARAC7, putative, expressed
LOC_Os05g43820Os.10032.1.S1_at11/115+25391593..25394975RAC-like GTP binding protein ARAC7, putative, expressed
LOC_Os05g43820Os.45896.1.S1_x_at5/115+25391593..25394975RAC-like GTP binding protein ARAC7, putative, expressed
LOC_Os05g43830Os.5650.1.S1_at9/115+25393874..25401165Proline iminopeptidase, putative, expressed
LOC_Os05g43830Os.10728.1.S1_at1/115+25393874..25401165Proline iminopeptidase, putative, expressed
LOC_Os05g43830Os.10719.1.S1_at1/115+25393874..25401165Proline iminopeptidase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26796.2.S1_at--1089--3151Chr05:25377244..25377268 (25 bp)
AATTCCCCTGGCGTTGCATTGATAA
LOC_Os05g43790
Os.26796.2.S1_at--469--2511Chr05:25377309..25377333 (25 bp)
AACATCATTCTTTCGTCATGCAGAG
LOC_Os05g43790
Os.26796.2.S1_at--209--351Chr05:25377393..25377417 (25 bp)
ATAACTGTACTTTTTCTCGCCAGGC
LOC_Os05g43790
Os.26796.2.S1_at--821--10391Chr05:25377522..25377546 (25 bp)
TTTTGTTTCCTTGTACTGCAGCCAT
LOC_Os05g43790
Os.26796.2.S1_at--456--10051Chr05:25377611..25377635 (25 bp)
TAGTTAGCTTCATCTCTTGCTGGGA
LOC_Os05g43790
Os.26796.2.S1_at--310--10691Chr05:25377627..25377651 (25 bp)
TTGCTGGGACCCTTTTCAAAAGCTT
LOC_Os05g43790
Os.26796.2.S1_at--1022--10311Chr05:25377640..25377664 (25 bp)
TTTCAAAAGCTTCCTATCACTGCCT
LOC_Os05g43790
Os.26796.2.S1_at--610--371Chr05:25377655..25377679 (25 bp)
ATCACTGCCTTTGTTTCTTATGTAC
LOC_Os05g43790
Os.26796.2.S1_at--324--8251Chr05:25377705..25377729 (25 bp)
GGCACTACACCTTATTACAGCATTC
LOC_Os05g43790
Os.26796.2.S1_at--1024--1811Chr05:25377754..25377777 (24 bp)
ACCCACACCATTTTAGTATCTGCTG
LOC_Os05g43790
Os.26796.2.S1_at--490--1651Chr05:25377781..25377805 (25 bp)
AGCGCCATGAATCCCCTTGAGATGA
LOC_Os05g43790
Target Sequence 
AATTCCCCTGGCGTTGCATTGATAACACTTGTGTCAGTGTCTAAAATTGTAAAATTCGTATCTTCAACATCATTCTTTCG
TCATGCAGAGTATTATGGTAGAAAGGTTTTATTGTATTAGCAGCATTCACATACTTACAGTGTAACAGAATAACTGTACT
TTTTCTCGCCAGGCACTTGATACATTTAATACTGCAATTGTATCTCCAATCTATTATGTAATGTTCACAACACTAACAAT
ACTTGCAAGCGTCATAATGTTCAAGGTAATATAAGTTCTTTTGTTTCCTTGTACTGCAGCCATTCATTTGGTAGATGATT
TGAATGCCCAAGTTATTTTCTGAAAGAAACTGAATATCCTTGATTTCTAGTTAGCTTCATCTCTTGCTGGGACCCTTTTC
AAAAGCTTCCTATCACTGCCTTTGTTTCTTATGTACACTTCAACTATGTACTAAAGCTACTGGCACTACACCTTATTACA
GCATTCATGTTACTTCAAATTAAAAACCATACCCACACCATTTTAGTATCTGCTGGGAGCGCCATGAATCCCCTTGAGAT
GA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26796.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis