Browse Element(s) Details


Os.18433.1.S1_s_at

Description gb:BM421610
DB_XREF= gi:18388412
DB_XREF=V017C03
CLONE=V017C03
TID=Os.18433.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.18433 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_175986.1 (A.thaliana) unknown protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4377010/11NLI interacting factor-like phosphatase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g43730NANA5+25334531..25340487retrotransposon protein, putative, unclassified
LOC_Os05g43740NANA5+25341655..25344451retrotransposon protein, putative, unclassified
LOC_Os05g43750OsAffx.15089.1.S1_at7/115+25348637..25349321hypothetical protein
LOC_Os05g43760Os.5286.1.S1_at11/115+25353153..25355496TCP family transcription factor containing protein, expressed
LOC_Os05g43770Os.18433.1.S1_at11/115+25363694..25369207NLI interacting factor-like phosphatase family protein, expressed
LOC_Os05g43770Os.18433.1.S1_s_at10/115+25363694..25369207NLI interacting factor-like phosphatase family protein, expressed
LOC_Os05g43780OsAffx.27296.1.S1_at11/115+25370570..25373591hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os05g43790Os.26796.1.S1_at11/115+25375397..25378937Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed
LOC_Os05g43790Os.26796.2.S1_at11/115+25375397..25378937Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed
LOC_Os05g43800Os.54844.1.S1_at11/115+25381341..25383227expressed protein
LOC_Os05g43810OsAffx.26001.4.S1_at11/115+25383841..25388015hypothetical protein
LOC_Os05g43820Os.37828.1.S1_at11/115+25391593..25394975RAC-like GTP binding protein ARAC7, putative, expressed
LOC_Os05g43820Os.10032.1.S1_at11/115+25391593..25394975RAC-like GTP binding protein ARAC7, putative, expressed
LOC_Os05g43820Os.45896.1.S1_x_at5/115+25391593..25394975RAC-like GTP binding protein ARAC7, putative, expressed
LOC_Os05g43830Os.5650.1.S1_at9/115+25393874..25401165Proline iminopeptidase, putative, expressed
LOC_Os05g43830Os.10728.1.S1_at1/115+25393874..25401165Proline iminopeptidase, putative, expressed
LOC_Os05g43830Os.10719.1.S1_at1/115+25393874..25401165Proline iminopeptidase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0005743cellular_componentmitochondrial inner membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18433.1.S1_s_at--927--4352Chr11:1094419..1094438 (20 bp)
CCAGCTGCTGGATCTGATCCCATTT
NONE
Os.18433.1.S1_s_at--161--7971NONE
GGATCTGATCCCATTTCTAGAGTAT
NONE
Os.18433.1.S1_s_at--736--6371Chr05:25367449..25367586 (25 bp)
GATCCCATTTCTAGAGTATGTTGCC
LOC_Os05g43770
Os.18433.1.S1_s_at--960--6511Chr05:25367602..25367626 (25 bp)
GATATTAGGACTGTGCTTGCTTCCT
LOC_Os05g43770
Os.18433.1.S1_s_at--1102--951Chr05:25367608..25367632 (25 bp)
AGGACTGTGCTTGCTTCCTATCAAG
LOC_Os05g43770
Os.18433.1.S1_s_at--211--4931Chr05:25367616..25367640 (25 bp)
GCTTGCTTCCTATCAAGGTCGTGAT
LOC_Os05g43770
Os.18433.1.S1_s_at--993--10671Chr05:25367622..25367646 (25 bp)
TTCCTATCAAGGTCGTGATGTTGCT
LOC_Os05g43770
Os.18433.1.S1_s_at--458--4751Chr05:25367644..25367668 (25 bp)
GCTGCAGAGTTTATCGAGCGTTCAA
LOC_Os05g43770
Os.18433.1.S1_s_at--1155--3231Chr05:25368912..25368936 (25 bp)
CAAGCACCTCAAGTCAAGTTGTTGA
LOC_Os05g43770
Os.18433.1.S1_s_at--491--1751Chr05:25368917..25368941 (25 bp)
ACCTCAAGTCAAGTTGTTGACTGCG
LOC_Os05g43770
Os.18433.1.S1_s_at--1142--1511Chr05:25368996..25369020 (25 bp)
AGCTAAATATCAACGTTCAAACCAC
LOC_Os05g43770
Target Sequence 
CCAGCTGCTGGATCTGATCCCATTTCTAGAGTATGTTGCCNATGGTGAGNCCTTNTGATATTAGGACTGTGCTTGCTTCC
TATCAAGGTCGTGATGTTGCTGCAGAGTTTATCGAGCGTTCAAAGGAACNCCAGAGGNGTATGCAAGAGCAAAAACAACA
TGGGNGTATATGGAGACNATAATGGACCTAATNTGCAGGAAGGATGAAGCTCCAATTGATTCATCTATCCTAGTTTTTTG
CCTTTATTTTTTTTTTNGGAAGGACGTATTTAGCCTGTTCCAAGCACCTCAAGTCAAGTTGTTGACTGCGATGAAAAATT
GAAATGATAACATGTAGTATTGTCAGATTAGGTTGCAAACATTTAGCTAAATATCAACGTTCAAACCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18433.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis