Browse Element(s) Details


OsAffx.31069.3.S1_at

Description tigr:9633.m02317
TID=OsAffx.31069.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2572011/11hypothetical protein
LOC_Os03g291003/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g25680Os.49598.1.S1_at4/115+14859041..14859619hypothetical protein
LOC_Os05g25690NANA5+14862924..14864351retrotransposon protein, putative, unclassified
LOC_Os05g25700OsAffx.4429.1.S1_at11/115+14868926..14874720WRKY DNA binding domain containing protein
LOC_Os05g25700Os.7949.1.S1_at1/115+14868926..14874720WRKY DNA binding domain containing protein
LOC_Os05g25710OsAffx.27013.1.S1_at11/115+14878501..14878863hypothetical protein
LOC_Os05g25720OsAffx.31069.3.S1_at11/115+14882761..14885793hypothetical protein
LOC_Os05g25720OsAffx.31069.2.S1_x_at1/115+14882761..14885793hypothetical protein
LOC_Os05g25740OsAffx.31869.1.S1_at9/115+14895338..14896447retrotransposon protein, putative, unclassified
LOC_Os05g25740OsAffx.31869.5.S1_x_at7/115+14895338..14896447retrotransposon protein, putative, unclassified
LOC_Os05g25740OsAffx.31869.2.S1_at1/115+14895338..14896447retrotransposon protein, putative, unclassified
LOC_Os05g25740OsAffx.31869.3.S1_s_at1/115+14895338..14896447retrotransposon protein, putative, unclassified
LOC_Os05g25740OsAffx.31869.4.S1_x_at1/115+14895338..14896447retrotransposon protein, putative, unclassified
LOC_Os05g25750OsAffx.21161.1.S1_at1/115+14900481..14905053retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g25760OsAffx.27014.1.S1_at11/115+14909678..14911343hypothetical protein
LOC_Os05g25760OsAffx.25373.1.S1_x_at1/115+14909678..14911343hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31069.3.S1_at--131--3313Chr05:14885442..14885466 (25 bp)
CACAGCCATGGCGGGAGTTTGCAAG
LOC_Os05g25720
OsAffx.31069.3.S1_at--465--9291Chr05:14885471..14885495 (25 bp)
TCCGAGTACCTTGCGAGGATCCTGA
LOC_Os05g25720
OsAffx.31069.3.S1_at--1062--9251Chr05:14885490..14885514 (25 bp)
TCCTGAGGAGTCTGTGGCCGGTTAC
LOC_Os05g25720
OsAffx.31069.3.S1_at--249--8891Chr05:14885493..14885517 (25 bp)
TGAGGAGTCTGTGGCCGGTTACATC
LOC_Os05g25720
OsAffx.31069.3.S1_at--439--3891Chr05:14885501..14885525 (25 bp)
CTGTGGCCGGTTACATCTCGTGGCT
LOC_Os05g25720
OsAffx.31069.3.S1_at--984--7531Chr05:14885531..14885555 (25 bp)
GGGCCAACGCCCAGCTTGAAGGTAT
LOC_Os05g25720
OsAffx.31069.3.S1_at--404--4392Chr05:14885533..14885557 (25 bp)
GCCAACGCCCAGCTTGAAGGTATCG
LOC_Os05g25720
OsAffx.31069.3.S1_at--241--1711Chr05:14885645..14885669 (25 bp)
ACCATCCACAGCTGCGCCTTGAGTT
LOC_Os05g25720
OsAffx.31069.3.S1_at--528--7671Chr05:14885680..14885704 (25 bp)
GGGTTCGCACGTTCTTGGAGAACTG
LOC_Os05g25720
OsAffx.31069.3.S1_at--258--3351Chr05:14885687..14885711 (25 bp)
CACGTTCTTGGAGAACTGATGCAGA
LOC_Os05g25720
OsAffx.31069.3.S1_at--553--653Chr05:14885705..14885729 (25 bp)
ATGCAGAGATAGACCAGCTGGCGAA
LOC_Os05g25720
Target Sequence 
CACAGCCATGGCGGGAGTTTGCAAGGAGCTCCGAGTACCTTGCGAGGATCCTGAGGAGTCTGTGGCCGGTTACATCTCGT
GGCTGAACGGGGCCAACGCCCAGCTTGAAGGTATCGACAAGCGTATCAACGAGGTCTTGAAGCAGGAGTGTCGTCGGTCG
AGCCGATATGCAGGAGGGCATGTGCTGGCCTGTATACGAGATCACCATCCACAGCTGCGCCTTGAGTTCCTCCACGAGGG
GTTCGCACGTTCTTGGAGAACTGATGCAGAGATAGACCAGCTGGCGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31069.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis