Browse Element(s) Details


OsAffx.25373.1.S1_x_at

Description tigr:9631.m03440
TID=OsAffx.25373.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3598011/11hypothetical protein
LOC_Os05g257601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g35930NANA3+19890793..19891581retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g35940NANA3+19892310..19894755retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g35950OsAffx.29246.1.S1_x_at6/113+19901971..19902842expressed protein
LOC_Os03g35950Os.46610.1.A1_x_at1/113+19901971..19902842expressed protein
LOC_Os03g35960OsAffx.25371.1.S1_at8/113+19904268..19904606hypothetical protein
LOC_Os03g35970Os.26535.1.S1_x_at4/113+19905897..19910473hypothetical protein
LOC_Os03g35970Os.26592.3.S1_x_at3/113+19905897..19910473hypothetical protein
LOC_Os03g35970Os.27520.8.S1_x_at2/113+19905897..19910473hypothetical protein
LOC_Os03g35970OsAffx.20736.1.S1_at1/113+19905897..19910473hypothetical protein
LOC_Os03g35980OsAffx.25373.1.S1_at11/113+19912168..19913256hypothetical protein
LOC_Os03g35980OsAffx.25373.1.S1_x_at11/113+19912168..19913256hypothetical protein
LOC_Os03g35990Os.54774.1.S1_at2/113+19917285..19921229retrotransposon, putative, centromere-specific
LOC_Os03g35990Os.54774.1.S1_x_at2/113+19917285..19921229retrotransposon, putative, centromere-specific
LOC_Os03g36000OsAffx.24121.1.S1_at11/113+19923588..19928036retrotransposon protein, putative, unclassified
LOC_Os03g36000OsAffx.24121.3.S1_at4/113+19923588..19928036retrotransposon protein, putative, unclassified
LOC_Os03g36020NANA3+19934577..19935700retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g36030Os.27691.1.S1_x_at1/113+19935950..19940493retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25373.1.S1_x_at--906--10211Chr03:19912198..19912222 (25 bp)
TATTCCTTCTTTCAATCGCCCAAGA
LOC_Os03g35980
OsAffx.25373.1.S1_x_at--533--91Chr03:19912199..19912223 (25 bp)
ATTCCTTCTTTCAATCGCCCAAGAT
LOC_Os03g35980
OsAffx.25373.1.S1_x_at--610--10671Chr03:19912200..19912224 (25 bp)
TTCCTTCTTTCAATCGCCCAAGATG
LOC_Os03g35980
OsAffx.25373.1.S1_x_at--303--9251Chr03:19912201..19912225 (25 bp)
TCCTTCTTTCAATCGCCCAAGATGG
LOC_Os03g35980
OsAffx.25373.1.S1_x_at--440--4312Chr03:19912202..19912226 (25 bp)
CCTTCTTTCAATCGCCCAAGATGGT
LOC_Os03g35980
OsAffx.25373.1.S1_x_at--271--3652Chr03:19912206..19912228 (23 bp)
CTTTCAATCGCCCAAGATGGTAAAG
LOC_Os03g35980
OsAffx.25373.1.S1_x_at--79--10492Chr03:19912208..19912228 (21 bp)
TTCAATCGCCCAAGATGGTAAAGGT
LOC_Os03g35980
OsAffx.25373.1.S1_x_at--1090--2772Chr06:22533007..22533500 (25 bp)
AAGATGGTAAAGGTGGTGACAGCCC
NONE
OsAffx.25373.1.S1_x_at--145--2156Chr06:27057655..27057680 (25 bp)
ACAGCCCTCAAGACACTGAAGTCCT
NONE
OsAffx.25373.1.S1_x_at--1071--9299Chr09:3132512..3132536 (25 bp)
TCCCTGTCCGGGTGCGCAGTAGAGC
NONE
OsAffx.25373.1.S1_x_at--212--4133Chr11:8466603..8466627 (25 bp)
CGCAGTAGAGCGATATCTGGGAGTA
NONE
Target Sequence 
TATTCCTTCTTTCAATCGCCCAAGATGGTAAAGGTGGTGACAGCCCTCAAGACACTGAAGTCCTCCCTGTCCGGGTGCGC
AGTAGAGCGATATCTGGGAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25373.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis