Browse Element(s) Details


OsAffx.24121.1.S1_at

Description gb:NM_184669.1
DB_XREF= gi:34896427
GEN=OSJNBa0077G22.5
TID=OsAffx.24121.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative reverse transcriptase (OSJNBa0077G22.5), mRNA.
PROD=putative reverse transcriptase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3600011/11retrotransposon protein, putative, unclassified
LOC_Os06g443403/11retrotransposon protein, putative, unclassified
LOC_Os06g312601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g35950OsAffx.29246.1.S1_x_at6/113+19901971..19902842expressed protein
LOC_Os03g35950Os.46610.1.A1_x_at1/113+19901971..19902842expressed protein
LOC_Os03g35960OsAffx.25371.1.S1_at8/113+19904268..19904606hypothetical protein
LOC_Os03g35970Os.26535.1.S1_x_at4/113+19905897..19910473hypothetical protein
LOC_Os03g35970Os.26592.3.S1_x_at3/113+19905897..19910473hypothetical protein
LOC_Os03g35970Os.27520.8.S1_x_at2/113+19905897..19910473hypothetical protein
LOC_Os03g35970OsAffx.20736.1.S1_at1/113+19905897..19910473hypothetical protein
LOC_Os03g35980OsAffx.25373.1.S1_at11/113+19912168..19913256hypothetical protein
LOC_Os03g35980OsAffx.25373.1.S1_x_at11/113+19912168..19913256hypothetical protein
LOC_Os03g35990Os.54774.1.S1_at2/113+19917285..19921229retrotransposon, putative, centromere-specific
LOC_Os03g35990Os.54774.1.S1_x_at2/113+19917285..19921229retrotransposon, putative, centromere-specific
LOC_Os03g36000OsAffx.24121.1.S1_at11/113+19923588..19928036retrotransposon protein, putative, unclassified
LOC_Os03g36000OsAffx.24121.3.S1_at4/113+19923588..19928036retrotransposon protein, putative, unclassified
LOC_Os03g36020NANA3+19934577..19935700retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g36030Os.27691.1.S1_x_at1/113+19935950..19940493retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g36050OsAffx.3613.1.S1_x_at1/113+19949947..19954992retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24121.1.S1_at--492--5452Chr06:26772031..26772055 (25 bp)
GAACGAATACAGAACCCTGCTCGGT
LOC_Os06g44340
OsAffx.24121.1.S1_at--780--2594Chr06:26772043..26772067 (25 bp)
AACCCTGCTCGGTCGGCAATGTCTA
LOC_Os06g44340
OsAffx.24121.1.S1_at--1080--3192Chr06:26772059..26772083 (25 bp)
CAATGTCTATTGCTACCTTAACCAC
LOC_Os06g44340
OsAffx.24121.1.S1_at--897--10631Chr03:19924511..19924535 (25 bp)
TTCGCAAGCTTTTCTTCCACATGTC
LOC_Os03g36000
OsAffx.24121.1.S1_at--1159--8851Chr03:19924484..19924508 (25 bp)
TGATGCACCGATGGCAGAGGCTTTT
LOC_Os03g36000
OsAffx.24121.1.S1_at--972--8451Chr03:19923757..19924266 (25 bp)
TGGCCAGATGTTTGATCGGTCGCAA
LOC_Os03g36000
OsAffx.24121.1.S1_at--412--10651Chr03:19923716..19923740 (25 bp)
TTCGCCGCATTCCAACCATGGAAAT
LOC_Os03g36000
OsAffx.24121.1.S1_at--863--2291Chr03:19923695..19923719 (25 bp)
AAATGTGATTCAATTCCCCTACCTG
LOC_Os03g36000
OsAffx.24121.1.S1_at--986--3151Chr03:19923684..19923708 (25 bp)
AATTCCCCTACCTGATCAATCATGT
LOC_Os03g36000
OsAffx.24121.1.S1_at--577--3071Chr03:19923667..19923691 (25 bp)
AATCATGTCTCTTAACACCTTGTGC
LOC_Os03g36000
OsAffx.24121.1.S1_at--654--10492Chr09:5942314..5942334 (21 bp)
TTAACACCTTGTGCCAAGCTCGACG
NONE
Target Sequence 
GAACGAATACAGAACCCTGCTCGGTCGGCAATGTCTATTGCTACCTTAACCACAAACTATATGTTGTCAAATAAGAAAGG
AAGTGGAGGTATTGGGGTGGTGTTGAGAGATCACTTGGGAGCTTGTGTTGCGGCTTCGCAAGCTTTTCTTCCACATGTCC
TTGATGCACCGATGGCAGAGGCTTTTGCGCTGAGAGATGGGCTGTCCCTGGCACAACACATTGGTGCTAAAAATGTTATA
GTACAAACTGATTGTATGCAGGTGGTTTCAACGATGATGGATGGAGGATTTTCTGCTACAGCGGCTATGTCTGTGTTTGA
TGATTGCAAGCTGATGTGGGATGGGTTTGGTACAATTTCTATTGAGCACTGTAATAGAAACTCCAATCAGGTGGCTCATG
AACTGGCCAGATGTTTGATCGGTCGCAAATCTTCTCTGGTGAGCTTCGCCGCATTCCAACCATGGAAATGTGATTCAATT
CCCCTACCTGATCAATCATGTCTCTTAACACCTTGTGCCAAGCTCGACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24121.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis