Browse Element(s) Details


OsAffx.20736.1.S1_at

Description gb:NM_194890.1
DB_XREF= gi:37531139
TID=OsAffx.20736.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative retroelement (OSJNAa0028C16.12), mRNA.
PROD=putative retroelement
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0628011/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g220203/11retrotransposon protein, putative, unclassified
LOC_Os06g311502/11Transposable element protein, putative, Transposase_28
LOC_Os11g187802/11hypothetical protein
LOC_Os04g017602/11hypothetical protein
LOC_Os02g174402/11hypothetical protein
LOC_Os03g359701/11hypothetical protein
LOC_Os01g243301/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g06230NANA10+3178469..3182435retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g06240Os.46314.2.S1_x_at4/1110+3184877..3187834transposon protein, putative, unclassified
LOC_Os10g06240OsAffx.32036.1.S1_at1/1110+3184877..3187834transposon protein, putative, unclassified
LOC_Os10g06240Os.47114.1.S1_x_at1/1110+3184877..3187834transposon protein, putative, unclassified
LOC_Os10g06250OsAffx.20673.1.S1_x_at2/1110+3189991..3191743retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g06250Os.27691.1.S1_x_at1/1110+3189991..3191743retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g06250OsAffx.20695.1.S1_x_at1/1110+3189991..3191743retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g06250OsAffx.30496.1.S1_x_at1/1110+3189991..3191743retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g06260OsAffx.31869.3.S1_s_at11/1110+3192439..3193539retrotransposon protein, putative, unclassified
LOC_Os10g06260OsAffx.31869.3.S1_x_at11/1110+3192439..3193539retrotransposon protein, putative, unclassified
LOC_Os10g06260OsAffx.31869.3.S1_at8/1110+3192439..3193539retrotransposon protein, putative, unclassified
LOC_Os10g06260OsAffx.31869.5.S1_x_at4/1110+3192439..3193539retrotransposon protein, putative, unclassified
LOC_Os10g06260OsAffx.31869.4.S1_x_at3/1110+3192439..3193539retrotransposon protein, putative, unclassified
LOC_Os10g06270Os.27691.1.S1_x_at1/1110+3197395..3202967retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g06280OsAffx.20736.1.S1_at11/1110+3206055..3207031retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g06290NANA10+3209701..3216421retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g06300Os.15833.1.S1_at11/1110+3222433..3227058transposon protein, putative, unclassified
LOC_Os10g06300Os.46314.2.S1_x_at5/1110+3222433..3227058transposon protein, putative, unclassified
LOC_Os10g06300Os.47114.1.S1_x_at2/1110+3222433..3227058transposon protein, putative, unclassified
LOC_Os10g06300OsAffx.22896.1.S1_x_at1/1110+3222433..3227058transposon protein, putative, unclassified
LOC_Os10g06310Os.47999.3.A1_at5/1110+3229590..3237950retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g06310Os.45173.1.S1_x_at3/1110+3229590..3237950retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g06310OsAffx.20733.1.A1_x_at2/1110+3229590..3237950retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g06310Os.47999.3.A1_x_at2/1110+3229590..3237950retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g06310OsAffx.20877.1.S1_at1/1110+3229590..3237950retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20736.1.S1_at--1002--6471Chr10:3206544..3206568 (25 bp)
GATAGAGAACTTGGACCCCGTCCTT
LOC_Os10g06280
OsAffx.20736.1.S1_at--624--7511Chr10:3206484..3206508 (25 bp)
GTGGACTGCTAAACCCGCCTTGACT
LOC_Os10g06280
OsAffx.20736.1.S1_at--599--10073Chr09:13335708..13335732 (25 bp)
TAGGTCGGCGGATTCAACCGCTACA
LOC_Os09g22020
OsAffx.20736.1.S1_at--482--4431Chr10:3206336..3206360 (25 bp)
GCCTTCGATTACTCTGGGCCAGATG
LOC_Os10g06280
OsAffx.20736.1.S1_at--737--9893Chr09:13335758..13335782 (25 bp)
TACTCTGGGCCAGATGACGTGACCC
LOC_Os09g22020
OsAffx.20736.1.S1_at--235--7871Chr10:3206288..3206312 (25 bp)
GGTATTTATCCTCGTATTTCTAAAT
LOC_Os10g06280
OsAffx.20736.1.S1_at--542--6831Chr10:3206261..3206285 (25 bp)
GTTTCAAGTGCATCTGTTTCCTCTA
LOC_Os10g06280
OsAffx.20736.1.S1_at--1145--4951Chr10:3206252..3206276 (25 bp)
GCATCTGTTTCCTCTAACTTATCGA
LOC_Os10g06280
OsAffx.20736.1.S1_at--1090--1217Chr11:10638623..10638647 (25 bp)
AGTTCTCGTTCTCGATTTACAGGTC
LOC_Os11g18780
OsAffx.20736.1.S1_at--689--4035Chr11:10638629..10638653 (25 bp)
CGTTCTCGATTTACAGGTCTGGACA
LOC_Os11g18780
OsAffx.20736.1.S1_at--398--1271Chr10:3206170..3206194 (25 bp)
AGATAATGATCAGCTGTCACGCCCA
LOC_Os10g06280
Target Sequence 
GATAGAGAACTTGGACCCCGTCCTTGTTATTCCTGAGGACCAGCCAGAAAAGATCCCAGAGTGGACTGCTAAACCCGCCT
TGACTCCCTCCCTCCAATCCTTTATCGACATCATTGATGATCTCCGAAAACGGGGGTTGTCGGGATATGAAGTCGCTGCC
GACTTCGTAGGTCGGCGGATTCAACCGCTACAGGCCCGTGCCCATCCGGCCTTCGATTACTCTGGGCCAGATGACGTGAC
CCGGGTCTCTCCTCGGGGTATTTATCCTCGTATTTCTAAATTTGTTTCAAGTGCATCTGTTTCCTCTAACTTATCGAGTT
CTCGTTCTCGATTTACAGGTCTGGACAGTGACACTGTGGGGCGCCGCATCGGCCAGATAATGATCAGCTGTCACGCCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20736.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis