Browse Element(s) Details


OsAffx.31869.3.S1_at

Description gb:NM_194888.1
DB_XREF= gi:37531135
TID=OsAffx.31869.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative polyprotein (OSJNBa0028C16.19), mRNA.
PROD=putative polyprotein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g139508/11retrotransposon protein, putative, unclassified
LOC_Os10g062608/11retrotransposon protein, putative, unclassified
LOC_Os06g386037/11retrotransposon protein, putative, unclassified
LOC_Os07g331707/11retrotransposon protein, putative, unclassified
LOC_Os07g163607/11retrotransposon protein, putative, unclassified
LOC_Os07g458503/11retrotransposon protein, putative, unclassified
LOC_Os01g232303/11retrotransposon protein, putative, unclassified
LOC_Os01g380583/11retrotransposon protein, putative, unclassified
LOC_Os12g234203/11retrotransposon protein, putative, unclassified
LOC_Os05g445003/11retrotransposon protein, putative, unclassified
LOC_Os04g077303/11retrotransposon protein, putative, unclassified
LOC_Os01g380493/11retrotransposon protein, putative, unclassified
LOC_Os09g136403/11retrotransposon protein, putative, unclassified
LOC_Os05g204903/11retrotransposon protein, putative, unclassified
LOC_Os05g424323/11retrotransposon protein, putative, unclassified
LOC_Os05g243703/11retrotransposon protein, putative, unclassified
LOC_Os02g219503/11retrotransposon protein, putative, unclassified
LOC_Os08g103703/11retrotransposon protein, putative, unclassified
LOC_Os05g179003/11retrotransposon protein, putative, unclassified
LOC_Os06g273903/11retrotransposon protein, putative, unclassified
LOC_Os05g243803/11retrotransposon protein, putative, unclassified
LOC_Os05g298403/11retrotransposon protein, putative, unclassified
LOC_Os07g192402/11retrotransposon protein, putative, unclassified
LOC_Os09g010102/11retrotransposon protein, putative, unclassified
LOC_Os03g237702/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g13920NANA4+7750510..7757178retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g13930NANA4+7760912..7766422retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g13940NANA4+7770062..7770487hypothetical protein
LOC_Os04g13950OsAffx.31869.3.S1_x_at10/114+7773843..7774952retrotransposon protein, putative, unclassified
LOC_Os04g13950OsAffx.31869.4.S1_at9/114+7773843..7774952retrotransposon protein, putative, unclassified
LOC_Os04g13950OsAffx.31869.4.S1_x_at8/114+7773843..7774952retrotransposon protein, putative, unclassified
LOC_Os04g13950OsAffx.31869.3.S1_at8/114+7773843..7774952retrotransposon protein, putative, unclassified
LOC_Os04g13950OsAffx.31869.3.S1_s_at4/114+7773843..7774952retrotransposon protein, putative, unclassified
LOC_Os04g13950OsAffx.31869.5.S1_x_at4/114+7773843..7774952retrotransposon protein, putative, unclassified
LOC_Os04g13960Os.38764.1.S1_x_at4/114+7777148..7783222retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g13960Os.53292.1.S1_x_at3/114+7777148..7783222retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g13960Os.53292.1.S1_at3/114+7777148..7783222retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g13970Os.46314.2.S1_x_at1/114+7786228..7788855retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g13980NANA4+7789527..7790534hypothetical protein
LOC_Os04g13990Os.45173.5.S1_x_at4/114+7793690..7800117retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g13990Os.45173.1.S1_x_at1/114+7793690..7800117retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31869.3.S1_at--1009--96127Chr09:2286910..2286934 (25 bp)
TCATGACTATGAGGATTTTCAGGAG
NONE
OsAffx.31869.3.S1_at--59--35328Chr09:2286911..2286935 (25 bp)
CATGACTATGAGGATTTTCAGGAGT
NONE
OsAffx.31869.3.S1_at--973--6726Chr09:2286912..2286936 (25 bp)
ATGACTATGAGGATTTTCAGGAGTT
NONE
OsAffx.31869.3.S1_at--362--2496Chr07:19803214..19803337 (25 bp)
AACAGGATGGACAATCGACAGTCAC
LOC_Os07g33170
OsAffx.31869.3.S1_at--232--2136Chr07:19803215..19803338 (25 bp)
ACAGGATGGACAATCGACAGTCACA
LOC_Os07g33170
OsAffx.31869.3.S1_at--134--3496Chr07:19803216..19803339 (25 bp)
CAGGATGGACAATCGACAGTCACAA
LOC_Os07g33170
OsAffx.31869.3.S1_at--461--995Chr07:9558971..9559094 (25 bp)
AGGATGGACAATCGACAGTCACAAC
LOC_Os07g16360
OsAffx.31869.3.S1_at--303--8014Chr07:19803218..19803341 (25 bp)
GGATGGACAATCGACAGTCACAACA
LOC_Os07g33170
Target Sequence 
TCATGACTATGAGGATTTTCAGGAGTTGGTTGATAAAGCAATTCGACTGGAAGACAAGAAGAACAGGATGGACAATCGAC
AGTCACAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31869.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis