Browse Element(s) Details


Os.45173.5.S1_x_at

Description gb:NM_195774.1
DB_XREF= gi:37532907
TID=Os.45173.5
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.45173 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative retroelement (OSJNBa0027A14.8), mRNA.
PROD=putative retroelement
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1857011/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g1866011/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g1117011/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g167705/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g456104/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g176104/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g032404/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g264104/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g268604/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g269004/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g161804/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g205204/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g034744/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g077004/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g030104/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g085404/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g210684/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g268704/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g139904/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g188004/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g091404/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g224104/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g267604/11retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g196504/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g031204/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g312404/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g059604/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g290104/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g069904/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g041604/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g118204/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g201904/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g399204/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g210594/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g426504/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g121604/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g051904/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g204704/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g048902/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g18510NANA10+9061841..9064122UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os10g18520NANA10+9064903..9065118hypothetical protein
LOC_Os10g18530NANA10+9068364..9069065Cytokinin-O-glucosyltransferase 2, putative
LOC_Os10g18540Os.10731.2.A1_at1/1110+9071664..9073920retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g18550Os.27066.1.A1_x_at1/1110+9076666..9079862expressed protein
LOC_Os10g18560OsAffx.8279.1.S1_at2/1110+9080739..9085275retrotransposon protein, putative, unclassified
LOC_Os10g18560OsAffx.22699.1.S1_x_at1/1110+9080739..9085275retrotransposon protein, putative, unclassified
LOC_Os10g18570Os.45173.5.S1_x_at11/1110+9087600..9088397retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g18580NANA10+9088663..9091947retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g18590Os.45977.1.S1_at1/1110+9095734..9099400retrotransposon protein, putative, unclassified
LOC_Os10g18590Os.55127.1.S1_at1/1110+9095734..9099400retrotransposon protein, putative, unclassified
LOC_Os10g18600NANA10+9101647..9103844retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g18610OsAffx.7789.1.S1_x_at1/1110+9107557..9109841retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45173.5.S1_x_at--499--6014Chr10:9088175..9088199 (25 bp)
GAGAGCTTTATTTGTCCCACGCTAT
LOC_Os10g18570
Os.45173.5.S1_x_at--278--3674Chr10:9088180..9088204 (25 bp)
CTTTATTTGTCCCACGCTATCAATT
LOC_Os10g18570
Os.45173.5.S1_x_at--750--10354Chr10:9088181..9088205 (25 bp)
TTTATTTGTCCCACGCTATCAATTG
LOC_Os10g18570
Os.45173.5.S1_x_at--357--10414Chr10:9088182..9088206 (25 bp)
TTATTTGTCCCACGCTATCAATTGG
LOC_Os10g18570
Os.45173.5.S1_x_at--570--214Chr10:9088184..9088208 (25 bp)
ATTTGTCCCACGCTATCAATTGGCA
LOC_Os10g18570
Os.45173.5.S1_x_at--717--10253Chr10:9088185..9088209 (25 bp)
TTTGTCCCACGCTATCAATTGGCAC
LOC_Os10g18570
Os.45173.5.S1_x_at--555--8713Chr10:9088187..9088211 (25 bp)
TGTCCCACGCTATCAATTGGCACCA
LOC_Os10g18570
Os.45173.5.S1_x_at--931--14139Chr12:18783867..18783891 (25 bp)
AGAAGTTGCCCCAGCTCAAGCGGAT
LOC_Os12g31240
Os.45173.5.S1_x_at--1004--53339Chr12:18783868..18783892 (25 bp)
GAAGTTGCCCCAGCTCAAGCGGATC
LOC_Os12g31240
Os.45173.5.S1_x_at--54--28338Chr12:18783869..18783893 (25 bp)
AAGTTGCCCCAGCTCAAGCGGATCC
LOC_Os12g31240
Os.45173.5.S1_x_at--1056--66739Chr12:18783871..18783895 (25 bp)
GTTGCCCCAGCTCAAGCGGATCCTC
LOC_Os12g31240
Target Sequence 
GAGAGCTTTATTTGTCCCACGCTATCAATTGGCACCAAAGGTTCGTGTGGTGGAGAAAGAAGTTGCCCCAGCTCAAGCGG
ATCCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45173.5.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis