Browse Element(s) Details


OsAffx.8279.1.S1_at

Description gb:NM_195781.1
DB_XREF= gi:37532921
TID=OsAffx.8279.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein similar to putative retroelements (OSJNBa0027A14.15), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1864011/11retrotransposon protein, putative, unclassified
LOC_Os02g193002/11retrotransposon protein, putative, unclassified
LOC_Os10g185602/11retrotransposon protein, putative, unclassified
LOC_Os10g186601/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g197201/11retrotransposon protein, putative, unclassified
LOC_Os06g189501/11retrotransposon protein, putative, unclassified
LOC_Os04g226901/11retrotransposon protein, putative, unclassified
LOC_Os04g222001/11retrotransposon protein, putative, unclassified
LOC_Os06g153101/11retrotransposon protein, putative, unclassified
LOC_Os08g219601/11retrotransposon protein, putative, unclassified
LOC_Os01g518201/11retrotransposon protein, putative, unclassified
LOC_Os02g529701/11retrotransposon protein, putative, unclassified
LOC_Os01g640801/11retrotransposon protein, putative, unclassified
LOC_Os11g256701/11retrotransposon protein, putative, unclassified
LOC_Os08g123501/11retrotransposon protein, putative, unclassified
LOC_Os06g077201/11retrotransposon protein, putative, unclassified
LOC_Os06g258401/11retrotransposon protein, putative, unclassified
LOC_Os12g161501/11retrotransposon protein, putative, unclassified
LOC_Os01g578001/11retrotransposon protein, putative, unclassified
LOC_Os01g373401/11retrotransposon protein, putative, unclassified
LOC_Os07g131201/11retrotransposon protein, putative, unclassified
LOC_Os03g319861/11retrotransposon protein, putative, unclassified, expressed
LOC_Os07g061101/11retrotransposon protein, putative, unclassified
LOC_Os07g129801/11retrotransposon protein, putative, unclassified
LOC_Os12g085101/11retrotransposon protein, putative, unclassified
LOC_Os06g225201/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g18590Os.45977.1.S1_at1/1110+9095734..9099400retrotransposon protein, putative, unclassified
LOC_Os10g18590Os.55127.1.S1_at1/1110+9095734..9099400retrotransposon protein, putative, unclassified
LOC_Os10g18600NANA10+9101647..9103844retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g18610OsAffx.7789.1.S1_x_at1/1110+9107557..9109841retrotransposon protein, putative, unclassified
LOC_Os10g18620OsAffx.8338.1.S1_x_at1/1110+9114418..9114816retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g18630NANA10+9118207..9119076hypothetical protein
LOC_Os10g18640OsAffx.8279.1.S1_at11/1110+9119855..9120815retrotransposon protein, putative, unclassified
LOC_Os10g18640OsAffx.22699.1.S1_x_at1/1110+9119855..9120815retrotransposon protein, putative, unclassified
LOC_Os10g18650NANA10+9123986..9128407retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g18660Os.45173.5.S1_x_at11/1110+9128671..9137493retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g18660Os.45173.1.S1_x_at3/1110+9128671..9137493retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g18660OsAffx.8279.1.S1_at1/1110+9128671..9137493retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g18660OsAffx.16451.1.A1_x_at1/1110+9128671..9137493retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8279.1.S1_at--289--2132Chr10:9132964..9133082 (25 bp)
ACAGGGAGCGTCTTCAGGAGCCGAT
LOC_Os10g18660
OsAffx.8279.1.S1_at--222--9571Chr10:9120628..9120746 (25 bp)
TCTTCAGGAGCCGATGAGGCGAAGA
LOC_Os10g18640
OsAffx.8279.1.S1_at--858--8159Chr08:7270443..7270560 (25 bp)
GGAAAAGTGTTATAGCGGCACCAAT
LOC_Os08g12350
OsAffx.8279.1.S1_at--74--5212Chr10:9120499..9120523 (25 bp)
GAATCGGCCAAGTTAGTCCTGTCAC
LOC_Os10g18640
OsAffx.8279.1.S1_at--570--492Chr10:9120497..9120521 (25 bp)
ATCGGCCAAGTTAGTCCTGTCACCA
LOC_Os10g18640
OsAffx.8279.1.S1_at--635--4916Chr08:13124566..13124689 (25 bp)
ATCGGAAACCAAAGATTCACGCCAA
LOC_Os08g21960
OsAffx.8279.1.S1_at--362--2332Chr02:11279961..11279981 (21 bp)
AAAGATTCACGCCAACTGTTGCATT
LOC_Os02g19300
OsAffx.8279.1.S1_at--1152--111Chr10:9120134..9120158 (25 bp)
ATTCACGCCAACTGTTGCATTCCTT
LOC_Os10g18640
OsAffx.8279.1.S1_at--320--4951Chr10:9120118..9120142 (25 bp)
GCATTCCTTCGACCTTGCATCAATG
LOC_Os10g18640
OsAffx.8279.1.S1_at--49--10833Chr03:18250051..18250200 (25 bp)
TTGTGCCAGCCGACAAATGGAGAAC
LOC_Os03g31986
OsAffx.8279.1.S1_at--367--3271Chr10:9119923..9119944 (22 bp)
CAAATGGAGAACCTAAGCTATTACT
LOC_Os10g18640
Target Sequence 
ACAGGGAGCGTCTTCAGGAGCCGATGAGGCGAAGAGGTTGGCAAAAGGGAAAAGTGTTATAGCGGCACCAATTAACATGG
TCTTTACATTGCCAGCTGAATTCGGGATCGATCAGGCCGATGTCGATGAAGTGGAAGAGGAATCGGCCAAGTTAGTCCTG
TCACCAGAACAGGCAGTATTCGAGAAACCCGAGGGGACAGAGAATCGACATCTTAAACCATTGTATATAAACGGCTACGT
CAATGGGAAGCCGATGTCTAAGATGATGGTCGATGGTGGGGCCGCGGTGAATTTGATGCCTTATGCTACGTTTAGGAAGT
TGGGTAGGAACGCCGAGGATCTCATCAAGACAAATATGGTGCTCAAGGACTTTGGTGGTAATCCATCGGAAACCAAAGAT
TCACGCCAACTGTTGCATTCCTTCGACCTTGCATCAATGCTTGATTCAATGGCAAGGCGACAAAATAGAGATTGTGCCAG
CCGACAAATGGAGAACCTAAGCTATTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8279.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis