Browse Element(s) Details


OsAffx.30496.1.S1_x_at

Description tigr:9638.m01865
TID=OsAffx.30496.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g221502/11hypothetical protein
LOC_Os06g310501/11retrotransposon protein, putative, unclassified
LOC_Os10g062501/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g22100Os.15513.1.S1_at11/1110+11082931..11085694expressed protein
LOC_Os10g22100Os.15513.2.S1_x_at11/1110+11082931..11085694expressed protein
LOC_Os10g22100OsAffx.8217.1.S1_x_at6/1110+11082931..11085694expressed protein
LOC_Os10g22110OsAffx.20446.1.S1_at11/1110+11087332..11089941hypothetical protein
LOC_Os10g22130OsAffx.29724.1.S1_x_at11/1110+11096351..11101516hypothetical protein
LOC_Os10g22130OsAffx.29724.3.S1_x_at2/1110+11096351..11101516hypothetical protein
LOC_Os10g22140OsAffx.29724.2.S1_x_at11/1110+11102773..11105752hypothetical protein
LOC_Os10g22140OsAffx.29724.2.S1_at11/1110+11102773..11105752hypothetical protein
LOC_Os10g22150OsAffx.30496.1.S1_at3/1110+11108438..11108830hypothetical protein
LOC_Os10g22150OsAffx.30496.1.S1_x_at2/1110+11108438..11108830hypothetical protein
LOC_Os10g22150OsAffx.20673.1.S1_x_at1/1110+11108438..11108830hypothetical protein
LOC_Os10g22160OsAffx.8215.1.S1_at11/1110+11114208..11114690retrotransposon protein, putative, unclassified
LOC_Os10g22164Os.35344.3.S1_x_at8/1110+11118781..11127943transposon protein, putative, Mutator sub-class
LOC_Os10g22164Os.35344.18.S1_x_at7/1110+11118781..11127943transposon protein, putative, Mutator sub-class
LOC_Os10g22164OsAffx.22940.5.S1_x_at4/1110+11118781..11127943transposon protein, putative, Mutator sub-class
LOC_Os10g22164OsAffx.22940.5.S1_at4/1110+11118781..11127943transposon protein, putative, Mutator sub-class
LOC_Os10g22170Os.46889.1.S1_at11/1110+11128950..11132739expressed protein
LOC_Os10g22180OsAffx.20442.1.S1_at11/1110+11132636..11134235hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30496.1.S1_x_at--888--9494Chr10:11108206..11108230 (25 bp)
TCTCGCCGGCGCTAGGGACTTCGGC
NONE
OsAffx.30496.1.S1_x_at--328--19314Chr12:10912084..10912107 (24 bp)
ACGGAGACCACCTACGCGTAGAGGG
NONE
OsAffx.30496.1.S1_x_at--642--6131Chr10:11108258..11108313 (25 bp)
GAGGGCAACGAGACGAACCCCGACG
NONE
OsAffx.30496.1.S1_x_at--112--81721Chr12:10779389..10779412 (24 bp)
GGAACAAAACCCCTCAATCAATCGG
NONE
OsAffx.30496.1.S1_x_at--503--372Chr10:11108772..11108796 (25 bp)
ATCAATCGGAGAAGACGGAGTCGGA
LOC_Os10g22150
OsAffx.30496.1.S1_x_at--1037--5252Chr10:11108817..11108841 (25 bp)
GAAACGGCGGCTAGGGTTCGGCTCG
NONE
OsAffx.30496.1.S1_x_at--1139--10751NONE
TTGACGAAGGGCCTGACAGCAAATG
NONE
OsAffx.30496.1.S1_x_at--76--7571NONE
GGGCCTGACAGCAAATGAAAGCTCT
NONE
OsAffx.30496.1.S1_x_at--591--5131Chr10:11110800..11110824 (25 bp)
GCAAATGAAAGCTCTATTCGCAGGA
NONE
OsAffx.30496.1.S1_x_at--1124--2691Chr10:11110808..11110832 (25 bp)
AAGCTCTATTCGCAGGAGCGGAGTT
NONE
OsAffx.30496.1.S1_x_at--427--9352Chr10:11110817..11110841 (25 bp)
TCGCAGGAGCGGAGTTGGCAACATC
NONE
Target Sequence 
TCTCGCCGGCGCTAGGGACTTCGGCGGCGGAAACGGAGACCACCTACGCGTAGAGGGCAACGAGACGAACCCCGACGGCG
GCGCTCCGGTGGTCGACGGCGGAAACGGAGGGGCGGCCGAGCTTCTTCTCCTCACGGCGCACCTAACGGTGATGGCGGCG
ACCGACGGCGACGACGGAGACGGCGGCGCGACGATGCCGAAGATGACCGGCGGCGGCGGCGGACTTGGGGAGCGTCGCGA
CGGCGCTAGGAGACACGGGAGGACTCGGGAGAGGGGGCAAACGAAAGAGGAGATCACGGGGAAGGAAGAGGAGACCGAGA
GGAACAAAACCCCTCAATCAATCGGAGAAGACGGAGTCGGATTCGGCCGGATTTGGGGCGGGAAACGGCGGCTAGGGTTC
GGCTCGGCGGCGCCCGGCCGGAGGTTGACGAAGGGCCTGACAGCAAATGAAAGCTCTATTCGCAGGAGCGGAGTTGGCAA
CATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30496.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis