Browse Element(s) Details


OsAffx.20442.1.S1_at

Description tigr:9638.m01868
TID=OsAffx.20442.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2218011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g22150OsAffx.30496.1.S1_at3/1110+11108438..11108830hypothetical protein
LOC_Os10g22150OsAffx.30496.1.S1_x_at2/1110+11108438..11108830hypothetical protein
LOC_Os10g22150OsAffx.20673.1.S1_x_at1/1110+11108438..11108830hypothetical protein
LOC_Os10g22160OsAffx.8215.1.S1_at11/1110+11114208..11114690retrotransposon protein, putative, unclassified
LOC_Os10g22164Os.35344.3.S1_x_at8/1110+11118781..11127943transposon protein, putative, Mutator sub-class
LOC_Os10g22164Os.35344.18.S1_x_at7/1110+11118781..11127943transposon protein, putative, Mutator sub-class
LOC_Os10g22164OsAffx.22940.5.S1_x_at4/1110+11118781..11127943transposon protein, putative, Mutator sub-class
LOC_Os10g22164OsAffx.22940.5.S1_at4/1110+11118781..11127943transposon protein, putative, Mutator sub-class
LOC_Os10g22170Os.46889.1.S1_at11/1110+11128950..11132739expressed protein
LOC_Os10g22180OsAffx.20442.1.S1_at11/1110+11132636..11134235hypothetical protein
LOC_Os10g22184NANA10+11137941..11138635hypothetical protein
LOC_Os10g22190OsAffx.4823.1.S1_at1/1110+11140103..11141141hypothetical protein
LOC_Os10g22200OsAffx.20441.1.S1_at6/1110+11142073..11146040hypothetical protein
LOC_Os10g22200OsAffx.22850.1.S1_x_at2/1110+11142073..11146040hypothetical protein
LOC_Os10g22200OsAffx.30486.1.S1_at1/1110+11142073..11146040hypothetical protein
LOC_Os10g22210NANA10+11153736..11159705retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20442.1.S1_at--390--3111Chr10:11134171..11134195 (25 bp)
AATATTCATTATTCGACTACCAAGC
LOC_Os10g22180
OsAffx.20442.1.S1_at--322--5691Chr10:11134157..11134181 (25 bp)
GACTACCAAGCGATGATTTTTTATG
LOC_Os10g22180
OsAffx.20442.1.S1_at--1028--351Chr10:11134128..11134152 (25 bp)
ATCAATAAGACGATCCTTCCAAGGA
LOC_Os10g22180
OsAffx.20442.1.S1_at--970--6171Chr10:11134105..11134129 (25 bp)
GAGGAGATCCAAGTGTCTCCAGCAA
LOC_Os10g22180
OsAffx.20442.1.S1_at--983--5571Chr10:11133737..11133761 (25 bp)
GAAAGGTCCCGCAGGCACATCAAAG
LOC_Os10g22180
OsAffx.20442.1.S1_at--471--6635Chr11:19320986..19321332 (25 bp)
GTTGTGTTGATATTCCTTCATCTGA
NONE
OsAffx.20442.1.S1_at--295--671Chr10:11133316..11133336 (21 bp)
ATGAAGAAGACTGGGCACCAACTCC
LOC_Os10g22180
OsAffx.20442.1.S1_at--106--6291Chr10:11133167..11133191 (25 bp)
GATGTTCATCTTCCTACTGCAAAAT
LOC_Os10g22180
OsAffx.20442.1.S1_at--794--1011Chr10:11133100..11133124 (25 bp)
AGGTTCTGACAGTATGCCCAAGCTC
LOC_Os10g22180
OsAffx.20442.1.S1_at--266--9171Chr10:11133086..11133110 (25 bp)
TGCCCAAGCTCTCCTGATACTGATT
LOC_Os10g22180
OsAffx.20442.1.S1_at--192--6591Chr10:11132671..11133089 (25 bp)
GATTCCCCGATTTACATGAGCAGTG
LOC_Os10g22180
Target Sequence 
AATATTCATTATTCGACTACCAAGCGATGATTTTTTATGCTCTATCAATAAGACGATCCTTCCAAGGAGGAGATCCAAGT
GTCTCCAGCAAAAGACCAAGCAATGTGGAATCTAACAGGAAAGGTCCCGCAGGCACATCAAAGAAGAAGAAAAGGGGATG
TTGTGTTGATATTCCTTCATCTGAATCTGATGAAGAAGACTGGGCACCAACTCCCACAAGGGAGGACAACCAACCAAATA
GGAATATGATGGTGGACGATACTGAAGTGGCCAAGGATGTTCATCTTCCTACTGCAAAATGTGTAGGAAGAATCACACTT
GACATAGAAGACTGGAGACCGGAGGTTCTGACAGTATGCCCAAGCTCTCCTGATACTGATTCCCCGATTTACATGAGCAG
TG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20442.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis