Browse Element(s) Details


OsAffx.22850.1.S1_x_at

Description gb:NM_183945.1
DB_XREF= gi:34895017
GEN=OJ1111_G12.17
TID=OsAffx.22850.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OJ1111_G12.17 (OJ1111_G12.17), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g222002/11hypothetical protein
LOC_Os02g212002/11hypothetical protein
LOC_Os05g253002/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g082802/11retrotransposon protein, putative, unclassified
LOC_Os04g284401/11hypothetical protein
LOC_Os05g140601/11retrotransposon protein, putative, unclassified
LOC_Os09g020401/11hypothetical protein
LOC_Os04g013701/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g22164Os.35344.3.S1_x_at8/1110+11118781..11127943transposon protein, putative, Mutator sub-class
LOC_Os10g22164Os.35344.18.S1_x_at7/1110+11118781..11127943transposon protein, putative, Mutator sub-class
LOC_Os10g22164OsAffx.22940.5.S1_x_at4/1110+11118781..11127943transposon protein, putative, Mutator sub-class
LOC_Os10g22164OsAffx.22940.5.S1_at4/1110+11118781..11127943transposon protein, putative, Mutator sub-class
LOC_Os10g22170Os.46889.1.S1_at11/1110+11128950..11132739expressed protein
LOC_Os10g22180OsAffx.20442.1.S1_at11/1110+11132636..11134235hypothetical protein
LOC_Os10g22184NANA10+11137941..11138635hypothetical protein
LOC_Os10g22190OsAffx.4823.1.S1_at1/1110+11140103..11141141hypothetical protein
LOC_Os10g22200OsAffx.20441.1.S1_at6/1110+11142073..11146040hypothetical protein
LOC_Os10g22200OsAffx.22850.1.S1_x_at2/1110+11142073..11146040hypothetical protein
LOC_Os10g22200OsAffx.30486.1.S1_at1/1110+11142073..11146040hypothetical protein
LOC_Os10g22210NANA10+11153736..11159705retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g22220OsAffx.15648.1.S1_at1/1110+11163371..11166699Zinc knuckle family protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006075biological_processbeta-1,3 glucan biosynthesis
GO:0006278biological_processRNA-dependent DNA replication
GO:0009611biological_processresponse to wounding
GO:0000148cellular_component1,3-beta-glucan synthase complex
GO:0003723molecular_functionRNA binding
GO:0003755molecular_functionpeptidyl-prolyl cis-trans isomerase activity
GO:0003843molecular_function1,3-beta-glucan synthase activity
GO:0003964molecular_functionRNA-directed DNA polymerase activity
GO:0005516molecular_functioncalmodulin binding
GO:0005528molecular_functionFK506 binding
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22850.1.S1_x_at--255--7911Chr01:13466608..13466632 (25 bp)
GGATTCGGCAAAGAGCTAGATTCGA
NONE
OsAffx.22850.1.S1_x_at--594--41153Chr12:20326792..20326816 (25 bp)
CGAAGAACAGAGTATGCATCGGCTG
NONE
OsAffx.22850.1.S1_x_at--458--90533Chr12:8005488..8005512 (25 bp)
TGCATCGGCTGCGAAGGCATCGGCT
NONE
OsAffx.22850.1.S1_x_at--718--491Chr01:13466554..13466578 (25 bp)
ATCGGCTGGGATTTGCATCGGCTGA
NONE
OsAffx.22850.1.S1_x_at--411--10731Chr01:13466542..13466566 (25 bp)
TTGCATCGGCTGAGATGGAGCACAC
NONE
OsAffx.22850.1.S1_x_at--281--8552Chr02:5582201..5582390 (25 bp)
TGGAGCACACAGAGGACAGCCGATA
NONE
OsAffx.22850.1.S1_x_at--173--21913Chr08:8036970..8036992 (23 bp)
ACACAGAGGACAGCCGATACAGCCG
NONE
OsAffx.22850.1.S1_x_at--406--6471Chr01:13466506..13466530 (25 bp)
GATACAGCCGATTCTGTTAAGGACA
NONE
OsAffx.22850.1.S1_x_at--441--4491Chr01:13466500..13466524 (25 bp)
GCCGATTCTGTTAAGGACAGTTGTA
NONE
OsAffx.22850.1.S1_x_at--1105--6635Chr09:3706070..3706094 (25 bp)
GTTGTAAAACTGCTTCTAGAATCGA
NONE
OsAffx.22850.1.S1_x_at--645--2551Chr01:13466474..13466498 (25 bp)
AACTGCTTCTAGAATCGATGAACGT
NONE
Target Sequence 
GGATTCGGCAAAGAGCTAGATTCGAAGAACAGAGTATGCATCGGCTGCGAAGGCATCGGCTGGGATTTGCATCGGCTGAG
ATGGAGCACACAGAGGACAGCCGATACAGCCGATTCTGTTAAGGACAGTTGTAAAACTGCTTCTAGAATCGATGAACGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22850.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis