Browse Element(s) Details


Os.46889.1.S1_at

Description gb:AK073721.1
DB_XREF= gi:32983744
TID=Os.46889.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46889 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBb0089F16.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033061I10, full insert sequence.
FL= gb:AK073721.1 gb:AK104064.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2217011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g22140OsAffx.29724.2.S1_x_at11/1110+11102773..11105752hypothetical protein
LOC_Os10g22140OsAffx.29724.2.S1_at11/1110+11102773..11105752hypothetical protein
LOC_Os10g22150OsAffx.30496.1.S1_at3/1110+11108438..11108830hypothetical protein
LOC_Os10g22150OsAffx.30496.1.S1_x_at2/1110+11108438..11108830hypothetical protein
LOC_Os10g22150OsAffx.20673.1.S1_x_at1/1110+11108438..11108830hypothetical protein
LOC_Os10g22160OsAffx.8215.1.S1_at11/1110+11114208..11114690retrotransposon protein, putative, unclassified
LOC_Os10g22164Os.35344.3.S1_x_at8/1110+11118781..11127943transposon protein, putative, Mutator sub-class
LOC_Os10g22164Os.35344.18.S1_x_at7/1110+11118781..11127943transposon protein, putative, Mutator sub-class
LOC_Os10g22164OsAffx.22940.5.S1_x_at4/1110+11118781..11127943transposon protein, putative, Mutator sub-class
LOC_Os10g22164OsAffx.22940.5.S1_at4/1110+11118781..11127943transposon protein, putative, Mutator sub-class
LOC_Os10g22170Os.46889.1.S1_at11/1110+11128950..11132739expressed protein
LOC_Os10g22180OsAffx.20442.1.S1_at11/1110+11132636..11134235hypothetical protein
LOC_Os10g22184NANA10+11137941..11138635hypothetical protein
LOC_Os10g22190OsAffx.4823.1.S1_at1/1110+11140103..11141141hypothetical protein
LOC_Os10g22200OsAffx.20441.1.S1_at6/1110+11142073..11146040hypothetical protein
LOC_Os10g22200OsAffx.22850.1.S1_x_at2/1110+11142073..11146040hypothetical protein
LOC_Os10g22200OsAffx.30486.1.S1_at1/1110+11142073..11146040hypothetical protein
LOC_Os10g22210NANA10+11153736..11159705retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46889.1.S1_at--823--2131Chr10:11130620..11130722 (25 bp)
ACAGATTCTGCCAAGCGTGTTGGGT
LOC_Os10g22170
Os.46889.1.S1_at--296--4451Chr10:11130739..11130763 (25 bp)
GCCTATGGGCACTGGGAAGCTGTCA
LOC_Os10g22170
Os.46889.1.S1_at--951--2771Chr10:11130773..11130797 (25 bp)
AAGAGCATGCTGATGGGCCGAAAAC
LOC_Os10g22170
Os.46889.1.S1_at--787--2751Chr10:11131040..11131064 (25 bp)
AAGACCTATCTATTGGCGTAACCTC
LOC_Os10g22170
Os.46889.1.S1_at--276--9811Chr10:11131058..11131082 (25 bp)
TAACCTCCGAGTTTGTTGGGAATCA
LOC_Os10g22170
Os.46889.1.S1_at--901--851Chr10:11131108..11131132 (25 bp)
ATGGCTAATGCCACTTTGGATGGTG
LOC_Os10g22170
Os.46889.1.S1_at--380--5371Chr10:11132491..11132515 (25 bp)
GAAGAACCCTGCAGACATACTTTTG
LOC_Os10g22170
Os.46889.1.S1_at--1079--2311Chr10:11132525..11132549 (25 bp)
AAAGGGCCTGATGTTTTTTGCTCTG
LOC_Os10g22170
Os.46889.1.S1_at--1130--10851Chr10:11132554..11132578 (25 bp)
TTGGTAGGGTTTGTGAGCCACCTCA
LOC_Os10g22170
Os.46889.1.S1_at--115--9931Chr10:11132637..11132661 (25 bp)
TACTGAGACTCTTTTTCGTTGATGA
LOC_Os10g22170
Os.46889.1.S1_at--634--4831Chr10:11132668..11132692 (25 bp)
GCTCACTGCTCATGTAAATCCTGGA
LOC_Os10g22170
Target Sequence 
ACAGATTCTGCCAAGCGTGTTGGGTTGAATAGGCAGCTACTGCCTATGGGCACTGGGAAGCTGTCAGATCACAACAAGAG
CATGCTGATGGGCCGAAAACAAACTGATGTTATACCTGAAGACCTATCTATTGGCGTAACCTCCGAGTTTGTTGGGAATC
AACCACAAATTTCTTCAAAAAGAAAAATGGCTAATGCCACTTTGGATGGTGATGGTCAAACTCAAAAGNNNANCANNNNN
AGNNNTNNNNNNNNNANTNNTNTNNANNNNAATGAAGCCAACAACAAACGGAATGCAAAGGAAGATGAGATGTGAGGTCA
TGGGGATGAAGAACCCTGCAGACATACTTTTGCTTTGTGAAAAAGGGCCTGATGTTTTTTGCTCTGAGAGTTGGTAGGGT
TTGTGAGCCACCTCACCAAGCATCAATGATGCATATTTTTCATTATGCTACACTTGGATGTCTCAATTTAATCTACTGAG
ACTCTTTTTCGTTGATGATCACTGGCTCACTGCTCATGTAAATCCTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46889.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis