Browse Element(s) Details


OsAffx.20673.1.S1_x_at

Description gb:NM_195160.1
DB_XREF= gi:37531679
TID=OsAffx.20673.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0047G15.12), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g310502/11retrotransposon protein, putative, unclassified
LOC_Os01g268082/11retrotransposon protein, putative, unclassified
LOC_Os10g062502/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g061801/11hypothetical protein
LOC_Os10g094501/11retrotransposon protein, putative, unclassified
LOC_Os10g096001/11retrotransposon protein, putative, unclassified
LOC_Os03g231201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g155501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g221501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g31000Os.47114.1.S1_x_at1/116+18030977..18040297retrotransposon protein, putative, unclassified
LOC_Os06g31010NANA6+18040939..18041874retrotransposon protein, putative, unclassified
LOC_Os06g31020NANA6+18045214..18051952retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g31030NANA6+18054079..18056280retrotransposon protein, putative, unclassified
LOC_Os06g31040NANA6+18057942..18059264retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g31050OsAffx.20689.1.S1_x_at4/116+18060105..18063587retrotransposon protein, putative, unclassified
LOC_Os06g31050OsAffx.20673.1.S1_x_at2/116+18060105..18063587retrotransposon protein, putative, unclassified
LOC_Os06g31050OsAffx.20695.1.S1_x_at2/116+18060105..18063587retrotransposon protein, putative, unclassified
LOC_Os06g31050OsAffx.30496.1.S1_x_at1/116+18060105..18063587retrotransposon protein, putative, unclassified
LOC_Os06g31060Os.5517.1.S1_at11/116+18064905..18065748Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os06g31070Os.5918.1.S1_at8/116+18071226..18071904Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os06g31080Os.37083.2.S1_at1/116+18076804..18077130retrotransposon protein, putative, unclassified
LOC_Os06g31080Os.47130.4.A1_x_at1/116+18076804..18077130retrotransposon protein, putative, unclassified
LOC_Os06g31090Os.28593.1.S1_at9/116+18078028..18078822GAMYB-binding protein, putative, expressed
LOC_Os06g31100Os.5906.1.S1_at11/116+18080031..18085701GAMYB-binding protein, putative, expressed
LOC_Os06g31110OsAffx.27896.1.S1_at11/116+18086573..18087485hypothetical protein
LOC_Os06g31120NANA6+18088463..18090303retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20673.1.S1_x_at--134--10858Chr10:5160572..5160596 (25 bp)
TTGGTACTCACCACTACGGCAAACG
NONE
OsAffx.20673.1.S1_x_at--48--3716Chr10:5177503..5177527 (25 bp)
CTACGGCAAACGGTGCACGACGGCG
NONE
OsAffx.20673.1.S1_x_at--201--2232Chr10:5177791..5177815 (25 bp)
ACAAGGAGAAGCTTTATATGGCATT
NONE
OsAffx.20673.1.S1_x_at--49--1554Chr10:5177800..5177824 (25 bp)
AGCTTTATATGGCATTGGATCGAAG
NONE
OsAffx.20673.1.S1_x_at--1004--13Chr10:5177813..5177837 (25 bp)
ATTGGATCGAAGAGATCGAGCTCCA
NONE
OsAffx.20673.1.S1_x_at--463--6492Chr10:5177851..5177875 (25 bp)
GATTCGGGAAGAAATCGAACTCGGT
NONE
OsAffx.20673.1.S1_x_at--351--80521Chr10:5161037..5161061 (25 bp)
GGAGATCGAGAGGAACAAAACCCCT
NONE
OsAffx.20673.1.S1_x_at--111--81713Chr12:10779389..10779410 (22 bp)
GGAACAAAACCCCTCAATCAATTGG
NONE
OsAffx.20673.1.S1_x_at--189--3092Chr10:5177981..5178005 (25 bp)
AATCAATTGGAAGAATCCGGGTCGG
NONE
OsAffx.20673.1.S1_x_at--1003--3172Chr10:5177984..5178008 (25 bp)
CAATTGGAAGAATCCGGGTCGGATT
NONE
OsAffx.20673.1.S1_x_at--640--5533Chr10:5178015..5178039 (25 bp)
GAAACGGCGGCGCAAGACGGCGGCT
NONE
Target Sequence 
TTGGTACTCACCACTACGGCAAACGGTGCACGACGGCGGCCGGCGACGAGGAGGAAGGCGGCGGCGGTTCGGGTCGACGG
CGGCGAGCGGGCTCCGGTGGTCGGCGGCGAGAGAGGAGGGGCGGCCGGGCTTCCTCTCACCACGGCGCACCTATCGGCGG
CAACGGCGAGCGGCGGCGACGGCGGAGACGGCGCGGCGGCGTTGCCGAAGACGGCCGGCGGCGGCGGCGAACTTGGAGCA
CGTCGCGGCGGCGCTAGGAGGCACGGGAGAGCTCGGGAAAGGGGGCAAACGGAAGAGNAGAACAAGGAGAAGCTTTATAT
GGCATTGGATCGAAGAGATCGAGCTCCAAACNGGAGGAATCGATTCGGGAAGAAATCGAACTCGGTTTTTAGGGATAAAA
CAAAACGAATTCGATTCGGAGANAATACTCAACGGATTTCTTTGTTTCTTGAGGGGAAAGAAAGAGGAGATCGAGAGGAA
CAAAACCCCTCAATCAATTGGAAGAATCCGGGTCGGATTTGGGCGGAAACGGCGGCGCAAGACGGCGGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20673.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis