Browse Element(s) Details

Os.5517.1.S1_at

Description

gb:AA753757
DB_XREF= gi:2799232
DB_XREF=96BS0971
CLONE=96BS0971
TID=Os.5517.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.5517 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g31060	11/11	Protease inhibitor/seed storage/LTP family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g31000	Os.47114.1.S1_x_at	1/11	6	+	18030977..18040297	retrotransposon protein, putative, unclassified
LOC_Os06g31010	NA	NA	6	+	18040939..18041874	retrotransposon protein, putative, unclassified
LOC_Os06g31020	NA	NA	6	+	18045214..18051952	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g31030	NA	NA	6	+	18054079..18056280	retrotransposon protein, putative, unclassified
LOC_Os06g31040	NA	NA	6	+	18057942..18059264	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g31050	OsAffx.20689.1.S1_x_at	4/11	6	+	18060105..18063587	retrotransposon protein, putative, unclassified
LOC_Os06g31050	OsAffx.20673.1.S1_x_at	2/11	6	+	18060105..18063587	retrotransposon protein, putative, unclassified
LOC_Os06g31050	OsAffx.20695.1.S1_x_at	2/11	6	+	18060105..18063587	retrotransposon protein, putative, unclassified
LOC_Os06g31050	OsAffx.30496.1.S1_x_at	1/11	6	+	18060105..18063587	retrotransposon protein, putative, unclassified
LOC_Os06g31060	Os.5517.1.S1_at	11/11	6	+	18064905..18065748	Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os06g31070	Os.5918.1.S1_at	8/11	6	+	18071226..18071904	Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os06g31080	Os.37083.2.S1_at	1/11	6	+	18076804..18077130	retrotransposon protein, putative, unclassified
LOC_Os06g31080	Os.47130.4.A1_x_at	1/11	6	+	18076804..18077130	retrotransposon protein, putative, unclassified
LOC_Os06g31090	Os.28593.1.S1_at	9/11	6	+	18078028..18078822	GAMYB-binding protein, putative, expressed
LOC_Os06g31100	Os.5906.1.S1_at	11/11	6	+	18080031..18085701	GAMYB-binding protein, putative, expressed
LOC_Os06g31110	OsAffx.27896.1.S1_at	11/11	6	+	18086573..18087485	hypothetical protein
LOC_Os06g31120	NA	NA	6	+	18088463..18090303	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g31130	NA	NA	6	+	18090555..18091151	retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.5517.1.S1_at--72--887	1	Chr06:18065249..18065273 (25 bp)	TGATGCGACAACAATGCTGTCGGCG	LOC_Os06g31060
Os.5517.1.S1_at--7--221	1	Chr06:18065242..18065266 (25 bp)	ACAACAATGCTGTCGGCGGATGAGG	LOC_Os06g31060
Os.5517.1.S1_at--180--311	1	Chr06:18065204..18065228 (25 bp)	AATATCGCTGCCAGGCTATTTTCAC	LOC_Os06g31060
Os.5517.1.S1_at--444--935	1	Chr06:18065200..18065224 (25 bp)	TCGCTGCCAGGCTATTTTCACCATG	LOC_Os06g31060
Os.5517.1.S1_at--1131--1031	1	Chr06:18065185..18065209 (25 bp)	TTTCACCATGGTGCAGGCGATCATG	LOC_Os06g31060
Os.5517.1.S1_at--333--349	1	Chr06:18065172..18065196 (25 bp)	CAGGCGATCATGCAACAGGTGCAAT	LOC_Os06g31060
Os.5517.1.S1_at--982--249	1	Chr06:18065159..18065183 (25 bp)	AACAGGTGCAATTAGATGCTAGCTT	LOC_Os06g31060
Os.5517.1.S1_at--774--313	1	Chr06:18065150..18065174 (25 bp)	AATTAGATGCTAGCTTATTTGGTGT	LOC_Os06g31060
Os.5517.1.S1_at--367--971	1	Chr06:18065093..18065117 (25 bp)	TCAACTTACCCTCCATGTGTGGTGT	LOC_Os06g31060
Os.5517.1.S1_at--1034--365	1	Chr06:18065089..18065113 (25 bp)	CTTACCCTCCATGTGTGGTGTCTAC	LOC_Os06g31060
Os.5517.1.S1_at--408--747	1	Chr06:18064960..18064984 (25 bp)	GTGTGTGTCACGTAATGGAAATTTG	LOC_Os06g31060

Target Sequence

TGATGCGACAACAATGCTGTCGGCGGATGAGGCTGATGGCGCANNAATATCGCTGCCAGGCTATTTTCACCATGGTGCAG
GCGATCATGCAACAGGTGCAATTAGATGCTAGCTTATTTGGTGTGCCCCAAGCTCAGGCCCAGGCCNAGGTGGCTCTCAA
CTTACCCTCCATGTGTGGTGTCTACCCTAGGTACTNGCAACACTCCGTGTATCGTTGCTNACTAGTCGTTNGCGGTTNCT
TNGGTAGNTGTGTACTAGCATATATACTTTGNATAAANTAAANGTGTNCGCACATTANTCGTGTGTGTCACGTAATGGAA
ATTTG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis