Browse Element(s) Details


OsAffx.29724.1.S1_x_at

Description tigr:9638.m01863
TID=OsAffx.29724.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2213011/11hypothetical protein
LOC_Os02g247807/11hypothetical protein
LOC_Os02g473406/11hypothetical protein
LOC_Os12g230304/11hypothetical protein
LOC_Os02g240903/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g22080OsAffx.8217.1.S1_x_at11/1110+11073327..11077544hypothetical protein
LOC_Os10g22080OsAffx.8217.1.S1_at11/1110+11073327..11077544hypothetical protein
LOC_Os10g22080Os.57369.1.S1_at1/1110+11073327..11077544hypothetical protein
LOC_Os10g22080Os.15513.2.S1_x_at1/1110+11073327..11077544hypothetical protein
LOC_Os10g22090OsAffx.30493.1.S1_at11/1110+11077961..11078332hypothetical protein
LOC_Os10g22100Os.15513.1.S1_at11/1110+11082931..11085694expressed protein
LOC_Os10g22100Os.15513.2.S1_x_at11/1110+11082931..11085694expressed protein
LOC_Os10g22100OsAffx.8217.1.S1_x_at6/1110+11082931..11085694expressed protein
LOC_Os10g22110OsAffx.20446.1.S1_at11/1110+11087332..11089941hypothetical protein
LOC_Os10g22130OsAffx.29724.1.S1_x_at11/1110+11096351..11101516hypothetical protein
LOC_Os10g22130OsAffx.29724.3.S1_x_at2/1110+11096351..11101516hypothetical protein
LOC_Os10g22140OsAffx.29724.2.S1_x_at11/1110+11102773..11105752hypothetical protein
LOC_Os10g22140OsAffx.29724.2.S1_at11/1110+11102773..11105752hypothetical protein
LOC_Os10g22150OsAffx.30496.1.S1_at3/1110+11108438..11108830hypothetical protein
LOC_Os10g22150OsAffx.30496.1.S1_x_at2/1110+11108438..11108830hypothetical protein
LOC_Os10g22150OsAffx.20673.1.S1_x_at1/1110+11108438..11108830hypothetical protein
LOC_Os10g22160OsAffx.8215.1.S1_at11/1110+11114208..11114690retrotransposon protein, putative, unclassified
LOC_Os10g22164Os.35344.3.S1_x_at8/1110+11118781..11127943transposon protein, putative, Mutator sub-class
LOC_Os10g22164Os.35344.18.S1_x_at7/1110+11118781..11127943transposon protein, putative, Mutator sub-class
LOC_Os10g22164OsAffx.22940.5.S1_x_at4/1110+11118781..11127943transposon protein, putative, Mutator sub-class
LOC_Os10g22164OsAffx.22940.5.S1_at4/1110+11118781..11127943transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29724.1.S1_x_at--735--5276Chr08:10405642..10405666 (25 bp)
GAATGCAAGCTCTGCATCTTATATG
NONE
OsAffx.29724.1.S1_x_at--1144--3836Chr08:10405653..10405677 (25 bp)
CTGCATCTTATATGAGCACACGTGC
NONE
OsAffx.29724.1.S1_x_at--1021--6513Chr10:11096751..11096775 (25 bp)
GATTTCCAGGGCAGGCCAAGGTTTA
LOC_Os10g22130
OsAffx.29724.1.S1_x_at--1131--5696Chr08:10405769..10405793 (25 bp)
GACTCTGTTGATGATGACCCTCACA
NONE
OsAffx.29724.1.S1_x_at--98--3311Chr10:11096695..11096719 (25 bp)
CACAACAGTTATCCTCTAGACTACC
LOC_Os10g22130
OsAffx.29724.1.S1_x_at--193--2455Chr08:10405862..10405886 (25 bp)
AAAATCAATTGTCCCGTGATTCTTC
NONE
OsAffx.29724.1.S1_x_at--1143--10531Chr10:11096601..11096625 (25 bp)
TTCTTCGCAACCTTGACCCAAATAA
LOC_Os10g22130
OsAffx.29724.1.S1_x_at--815--5695Chr08:10405929..10405953 (25 bp)
GACTAATGGTTAGAGCTTTTCAAGA
NONE
OsAffx.29724.1.S1_x_at--63--6611Chr10:11096513..11096537 (25 bp)
GATTGTTGGTAGACAACATGCCAGC
LOC_Os10g22130
OsAffx.29724.1.S1_x_at--1041--10811Chr10:11096461..11096485 (25 bp)
TTGTCTCCCTCCGATGATATATCTC
LOC_Os10g22130
OsAffx.29724.1.S1_x_at--387--6514Chr08:10406039..10406063 (25 bp)
GATATATCTCTACCTTTCAAATTCA
NONE
Target Sequence 
GAATGCAAGCTCTGCATCTTATATGAGCACACGTGCCATTCTATCCACTAAAAATGATTATGTGGACAAGCTGAATGCAA
ATATGATTGATAGATTTCCAGGGCAGGCCAAGGTTTATCACAGTTTTGACTCTGTTGATGATGACCCTCACAACAGTTAT
CCTCTAGACTACCTGAACTCTATCACTCCAAATGGTCTCCCACCACACGAGCTAATAGTAAAAATCAATTGTCCCGTGAT
TCTTCTTCGCAACCTTGACCCAAATAATGGATTGTGCAATGGGACTAGACTAATGGTTAGAGCTTTTCAAGATAATGCAA
TTGATGCTAAGATTGTTGGTAGACAACATGCCAGCAAAAGGGTGTTCATCCCATGGATCCCTTTGTCTCCCTCCGATGAT
ATATCTCTACCTTTCAAATTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29724.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis