Browse Element(s) Details


OsAffx.29724.3.S1_x_at

Description tigr:9630.m04605
TID=OsAffx.29724.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4734011/11hypothetical protein
LOC_Os02g247807/11hypothetical protein
LOC_Os12g230305/11hypothetical protein
LOC_Os02g240903/11hypothetical protein
LOC_Os10g221302/11hypothetical protein
LOC_Os01g395601/11Anthocyanin regulatory Lc protein, putative
LOC_Os03g413001/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g47300OsAffx.2988.1.S1_at11/112+28881319..28881959hypothetical protein
LOC_Os02g47310Os.15731.1.S1_at11/112+28888196..28891679Tocopherol O-methyltransferase, chloroplast precursor, putative, expressed
LOC_Os02g47320Os.52590.1.S1_at11/112+28892221..28894993Vacuolar ATPase G subunit family protein, expressed
LOC_Os02g47320Os.4730.1.S1_at11/112+28892221..28894993Vacuolar ATPase G subunit family protein, expressed
LOC_Os02g47320OsAffx.24764.1.S1_at10/112+28892221..28894993Vacuolar ATPase G subunit family protein, expressed
LOC_Os02g47330NANA2+28895716..28896078expressed protein
LOC_Os02g47340OsAffx.29724.3.S1_x_at11/112+28897987..28903844hypothetical protein
LOC_Os02g47340OsAffx.29724.6.S1_x_at6/112+28897987..28903844hypothetical protein
LOC_Os02g47340OsAffx.29724.1.S1_x_at6/112+28897987..28903844hypothetical protein
LOC_Os02g47340OsAffx.29724.2.S1_x_at3/112+28897987..28903844hypothetical protein
LOC_Os02g47350Os.51095.1.A1_at9/112+28908875..28911021oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os02g47360OsAffx.24765.1.S1_at11/112+28911931..28914888LAGLIDADG DNA endonuclease family protein, expressed
LOC_Os02g47370Os.55550.1.S1_at10/112+28915307..28915923expressed protein
LOC_Os02g47380Os.17546.2.S1_x_at1/112+28917818..28921944retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g47390Os.18947.1.S1_at11/112+28922837..28926136expressed protein
LOC_Os02g47390Os.54282.1.S1_x_at2/112+28922837..28926136expressed protein
LOC_Os02g47390Os.51925.1.S1_at1/112+28922837..28926136expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0001708biological_processcell fate specification
GO:0009813biological_processflavonoid biosynthesis
GO:0009957biological_processepidermal cell fate specification
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29724.3.S1_x_at--1022--6513Chr10:11096751..11096775 (25 bp)
GATTTCCAGGGCAGGCCAAGGTTTA
LOC_Os10g22130
OsAffx.29724.3.S1_x_at--641--3214Chr01:22634596..22634620 (25 bp)
CAAGGTTTATCACAGCTTTGACTCT
LOC_Os01g39560
OsAffx.29724.3.S1_x_at--1132--5696Chr08:10405769..10405793 (25 bp)
GACTCTGTTGATGATGACCCTCACA
NONE
OsAffx.29724.3.S1_x_at--1030--2193Chr12:13015278..13015302 (25 bp)
ACAACAGTTATCCTCTGGACTACCT
LOC_Os12g23030
OsAffx.29724.3.S1_x_at--80--6635Chr08:10405976..10406000 (25 bp)
GTTGGTGGACAACATGCCAGCAAAA
NONE
OsAffx.29724.3.S1_x_at--235--3051Chr02:28898251..28898275 (25 bp)
AATCCCTTTGTCTTGCTCCGACGAT
LOC_Os02g47340
OsAffx.29724.3.S1_x_at--649--4213Chr08:10406034..10406058 (25 bp)
CCGACGATATATCTCTACCTTTCAA
NONE
OsAffx.29724.3.S1_x_at--686--9514Chr03:22919162..22919635 (25 bp)
TCTCAGTTTCGCAATGACCATTAAC
LOC_Os03g41300
OsAffx.29724.3.S1_x_at--437--10851Chr02:28898129..28898153 (25 bp)
TTGGGATCTATCTTCTAGAGCCCGT
LOC_Os02g47340
OsAffx.29724.3.S1_x_at--813--10038Chr08:10406155..10406178 (24 bp)
TAGAGCCCGTGTTTTCACATGGTCA
NONE
OsAffx.29724.3.S1_x_at--62--7833Chr12:13014895..13014919 (25 bp)
GGTCAGCTATATGTCGCATTGTCAA
LOC_Os12g23030
Target Sequence 
GATTTCCAGGGCAGGCCAAGGTTTATCACAGCTTTGACTCTGTTGATGATGACCCTCACAACAGTTATCCTCTGGACTAC
CTTAACTCTATTACTCCAAATGGTCTGCCACCACACGAGCTAATAGTAAAAATCAATTATCCCGTGATTCTTCTTCGCAA
CCTTGATCCAAATAATGGATTGTGTAATGGTACTAGACTAATGGTTAGAGCTTTTCAAGATAATGCAATTGATGCTGAGA
TTGTTGGTGGACAACATGCCAGCAAAAGGGTGTTCATCCCACGAATCCCTTTGTCTTGCTCCGACGATATATCTCTACCT
TTCAAATTCAAGAGGAAGCAATTCCCAATACGTCTCAGTTTCGCAATGACCATTAACAAATCACAAGGACAAACCATCCC
AAATGTTGGGATCTATCTTCTAGAGCCCGTGTTTTCACATGGTCAGCTATATGTCGCATTGTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29724.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis