Browse Element(s) Details


Os.55550.1.S1_at

Description gb:AK108297.1
DB_XREF= gi:32993506
TID=Os.55550.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55550 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-141-E07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-141-E07, full insert sequence.
FL= gb:AK108297.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4737010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g47310Os.15731.1.S1_at11/112+28888196..28891679Tocopherol O-methyltransferase, chloroplast precursor, putative, expressed
LOC_Os02g47320Os.52590.1.S1_at11/112+28892221..28894993Vacuolar ATPase G subunit family protein, expressed
LOC_Os02g47320Os.4730.1.S1_at11/112+28892221..28894993Vacuolar ATPase G subunit family protein, expressed
LOC_Os02g47320OsAffx.24764.1.S1_at10/112+28892221..28894993Vacuolar ATPase G subunit family protein, expressed
LOC_Os02g47330NANA2+28895716..28896078expressed protein
LOC_Os02g47340OsAffx.29724.3.S1_x_at11/112+28897987..28903844hypothetical protein
LOC_Os02g47340OsAffx.29724.6.S1_x_at6/112+28897987..28903844hypothetical protein
LOC_Os02g47340OsAffx.29724.1.S1_x_at6/112+28897987..28903844hypothetical protein
LOC_Os02g47340OsAffx.29724.2.S1_x_at3/112+28897987..28903844hypothetical protein
LOC_Os02g47350Os.51095.1.A1_at9/112+28908875..28911021oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os02g47360OsAffx.24765.1.S1_at11/112+28911931..28914888LAGLIDADG DNA endonuclease family protein, expressed
LOC_Os02g47370Os.55550.1.S1_at10/112+28915307..28915923expressed protein
LOC_Os02g47380Os.17546.2.S1_x_at1/112+28917818..28921944retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g47390Os.18947.1.S1_at11/112+28922837..28926136expressed protein
LOC_Os02g47390Os.54282.1.S1_x_at2/112+28922837..28926136expressed protein
LOC_Os02g47390Os.51925.1.S1_at1/112+28922837..28926136expressed protein
LOC_Os02g47400Os.52664.1.S1_at11/112+28929567..28933388pectinacetylesterase family protein, putative, expressed
LOC_Os02g47410Os.17381.1.S1_at11/112+28933917..28942098Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55550.1.S1_at--903--7631Chr02:28915860..28915884 (25 bp)
GGGACGAGCTGCTACGCCTGCTGCT
LOC_Os02g47370
Os.55550.1.S1_at--962--9111Chr02:28915839..28915863 (25 bp)
TGCTGCACACAAGCTCAAGTGGCCG
LOC_Os02g47370
Os.55550.1.S1_at--579--4451Chr02:28915792..28915816 (25 bp)
GCCTACTGCATCTGCCGGCAAGGAG
LOC_Os02g47370
Os.55550.1.S1_at--454--6151Chr02:28915716..28915740 (25 bp)
GAGGTCGAGCAACATCCGTGGCCTA
LOC_Os02g47370
Os.55550.1.S1_at--474--7551Chr02:28915699..28915723 (25 bp)
GTGGCCTACTGCAGGACTTCCTGGA
LOC_Os02g47370
Os.55550.1.S1_at--1092--8911Chr02:28915474..28915498 (25 bp)
TGACCACCTTGCTGAACAGGCTCTT
LOC_Os02g47370
Os.55550.1.S1_at--897--8971Chr02:28915462..28915486 (25 bp)
TGAACAGGCTCTTGCAGGATGATGA
LOC_Os02g47370
Os.55550.1.S1_at--693--5211Chr02:28915400..28915424 (25 bp)
GAATTTACCATGTCTTAGGATCATA
LOC_Os02g47370
Os.55550.1.S1_at--613--7351Chr02:28915339..28915363 (25 bp)
GTGAATCTTATGTTGTTCCCTGTTG
LOC_Os02g47370
Os.55550.1.S1_at--297--6711Chr02:28915325..28915349 (25 bp)
GTTCCCTGTTGAATTCTTTCTGCTA
LOC_Os02g47370
Os.55550.1.S1_at--876--9471Chr02:28915307..28915331 (25 bp)
TCTGCTAAATATTCTTTTACCCGCT
NONE
Target Sequence 
GGGACGAGCTGCTACGCCTGCTGCTGCACACAAGCTCAAGTGGCCGGCCGAGTCGTCCGTTCACCGCGGCCTACTGCATC
TGCCGGCAAGGAGCTGAAAGATGAGGGCTGCGGGGAAGCCGACGAGCGGCGGCAGCGGCACGTCGAGGTCGAGCAACATC
CGTGGCCTACTGCAGGACTTCCTGGAGCAGCAGCACCGGCTGGACGTGCGACGGCAGGAGGCGCTGGAGAGGCACGCGCA
GGAGCGGGCGGCCATCGAGCAGCAATGGAGACAGTCGATGCAGGCGCTGGAGCGGGAGAGGCTGATGCTCGAGCAGGCGT
GGATGGAGCGAGAGGAGCAGAGGAGGGTCAGGGAAGAGGCAAGGGCTGAGCGGAGGGACGAGCTCCTGACCACCTTGCTG
AACAGGCTCTTGCAGGATGATGATTTGTAGGGATGATGTGAGATGTCTAACTCAAACAGAGAATTTACCATGTCTTAGGA
TCATAGCTAGATGGGAATACTTTTTTTCTAGATTTGTGTATGTGAATCTTATGTTGTTCCCTGTTGAATTCTTTCTGCTA
AATATTCTTTTACCCGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55550.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis