Browse Element(s) Details


Os.15731.1.S1_at

Description gb:AK071763.1
DB_XREF= gi:32981786
TID=Os.15731.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15731 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023110C23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023110C23, full insert sequence.
FL= gb:AK071763.1 gb:AK061746.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4731011/11Tocopherol O-methyltransferase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g47290OsAffx.24763.1.S1_at11/112+28869364..28870848hypothetical protein
LOC_Os02g47300OsAffx.2988.1.S1_at11/112+28881319..28881959hypothetical protein
LOC_Os02g47310Os.15731.1.S1_at11/112+28888196..28891679Tocopherol O-methyltransferase, chloroplast precursor, putative, expressed
LOC_Os02g47320Os.52590.1.S1_at11/112+28892221..28894993Vacuolar ATPase G subunit family protein, expressed
LOC_Os02g47320Os.4730.1.S1_at11/112+28892221..28894993Vacuolar ATPase G subunit family protein, expressed
LOC_Os02g47320OsAffx.24764.1.S1_at10/112+28892221..28894993Vacuolar ATPase G subunit family protein, expressed
LOC_Os02g47330NANA2+28895716..28896078expressed protein
LOC_Os02g47340OsAffx.29724.3.S1_x_at11/112+28897987..28903844hypothetical protein
LOC_Os02g47340OsAffx.29724.6.S1_x_at6/112+28897987..28903844hypothetical protein
LOC_Os02g47340OsAffx.29724.1.S1_x_at6/112+28897987..28903844hypothetical protein
LOC_Os02g47340OsAffx.29724.2.S1_x_at3/112+28897987..28903844hypothetical protein
LOC_Os02g47350Os.51095.1.A1_at9/112+28908875..28911021oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os02g47360OsAffx.24765.1.S1_at11/112+28911931..28914888LAGLIDADG DNA endonuclease family protein, expressed
LOC_Os02g47370Os.55550.1.S1_at10/112+28915307..28915923expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006656biological_processphosphatidylcholine biosynthesis
GO:0007389biological_processpattern specification
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0009825biological_processmultidimensional cell growth
GO:0010051biological_processvascular tissue pattern formation (sensu Tracheophyta)
GO:0010189biological_processvitamin E biosynthesis
GO:0016126biological_processsterol biosynthesis
GO:0042023biological_processDNA endoreduplication
GO:0005737cellular_componentcytoplasm
GO:0005783cellular_componentendoplasmic reticulum
GO:0009507cellular_componentchloroplast
GO:0000234molecular_functionphosphoethanolamine N-methyltransferase activity
GO:0003838molecular_functionsterol 24-C-methyltransferase activity
GO:0008168molecular_functionmethyltransferase activity
GO:0008757molecular_functionS-adenosylmethionine-dependent methyltransferase activity
GO:0050342molecular_functiontocopherol O-methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15731.1.S1_at--113--7791Chr02:28890851..28890875 (25 bp)
GGTGCTCTCCTTCTGATTATGTCAA
LOC_Os02g47310
Os.15731.1.S1_at--743--2451Chr02:28890874..28890898 (25 bp)
AAAATTGCCGAGTCACTGTCTCTTG
LOC_Os02g47310
Os.15731.1.S1_at--57--6611Chr02:28891057..28891081 (25 bp)
GATTGGTCAGAGAACGTCGCCCCAT
LOC_Os02g47310
Os.15731.1.S1_at--75--1091Chr02:28891303..28891327 (25 bp)
AGGGCTCATCAAATTCACCATCATC
LOC_Os02g47310
Os.15731.1.S1_at--976--1111Chr02:28891367..28891391 (25 bp)
AGTGAAATTACGCTCCTGCTATCTT
LOC_Os02g47310
Os.15731.1.S1_at--1137--9071Chr02:28891383..28891407 (25 bp)
TGCTATCTTCTCCATCACGAATAAT
LOC_Os02g47310
Os.15731.1.S1_at--414--6071Chr02:28891420..28891444 (25 bp)
GAGTTAGCACCTACTGATGGCGATT
LOC_Os02g47310
Os.15731.1.S1_at--1080--9011Chr02:28891467..28891491 (25 bp)
TGCACTGTTACCACGTCATTGATTT
LOC_Os02g47310
Os.15731.1.S1_at--176--5291Chr02:28891525..28891549 (25 bp)
GAATGTGCACTCCAAATACGTCAAG
LOC_Os02g47310
Os.15731.1.S1_at--972--171Chr02:28891602..28891626 (25 bp)
ATTTAGCTCCCTCGGTGCAAGATTG
LOC_Os02g47310
Os.15731.1.S1_at--79--4891Chr02:28891626..28891650 (25 bp)
GCTTTGATTGACCTAGTTTTCTTCT
LOC_Os02g47310
Target Sequence 
GGTGCTCTCCTTCTGATTATGTCAAAATTGCCGAGTCACTGTCTCTTGAGGATATAAGGACAGCTGATTGGTCAGAGAAC
GTCGCCCCATTNTGGCCTGCGGTTATAAAATCANCATTGACATGGAAAGGTTTAACTTNTCTGCTAAGAAGTGGGTGGAA
GACGATAAGAGGTGCAATGGTGATGCCTNTGATGATCGAAGGATACAAGAAAGGGCTCATCAAATTCACCATCATCACCT
GTCGCAAGCCCGAAACAACGCAGTAGTACCCTAGTAGTGAAATTACGCTCCTGCTATCTTCTCCATCACGAATAATGCAA
ATTCTGACGAGTTAGCACCTACTGATGGCGATTTGTTGATTTGGGGAACAGCCAGTGCACTGTTACCACGTCATTGATTT
TGTACTCGTCAGACTTAAAAAAAAAATATCCATGAATGTGCACTCCAAATACGTCAAGAAATTCTTAGATCTTCAGACCA
ACTCGTCAGCTAGAGGTGGCTAAAAAGCTCATTTAGCTCCCTCGGTGCAAGATTGCTTTGATTGACCTAGTTTTCTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15731.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis