Browse Element(s) Details


Os.51095.1.A1_at

Description gb:AK060640.1
DB_XREF= gi:32970658
TID=Os.51095.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.51095 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-027-E08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-027-E08, full insert sequence.
FL= gb:AK060640.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g473509/11oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g196841/11Methyl-CpG binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g47310Os.15731.1.S1_at11/112+28888196..28891679Tocopherol O-methyltransferase, chloroplast precursor, putative, expressed
LOC_Os02g47320Os.52590.1.S1_at11/112+28892221..28894993Vacuolar ATPase G subunit family protein, expressed
LOC_Os02g47320Os.4730.1.S1_at11/112+28892221..28894993Vacuolar ATPase G subunit family protein, expressed
LOC_Os02g47320OsAffx.24764.1.S1_at10/112+28892221..28894993Vacuolar ATPase G subunit family protein, expressed
LOC_Os02g47330NANA2+28895716..28896078expressed protein
LOC_Os02g47340OsAffx.29724.3.S1_x_at11/112+28897987..28903844hypothetical protein
LOC_Os02g47340OsAffx.29724.6.S1_x_at6/112+28897987..28903844hypothetical protein
LOC_Os02g47340OsAffx.29724.1.S1_x_at6/112+28897987..28903844hypothetical protein
LOC_Os02g47340OsAffx.29724.2.S1_x_at3/112+28897987..28903844hypothetical protein
LOC_Os02g47350Os.51095.1.A1_at9/112+28908875..28911021oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os02g47360OsAffx.24765.1.S1_at11/112+28911931..28914888LAGLIDADG DNA endonuclease family protein, expressed
LOC_Os02g47370Os.55550.1.S1_at10/112+28915307..28915923expressed protein
LOC_Os02g47380Os.17546.2.S1_x_at1/112+28917818..28921944retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g47390Os.18947.1.S1_at11/112+28922837..28926136expressed protein
LOC_Os02g47390Os.54282.1.S1_x_at2/112+28922837..28926136expressed protein
LOC_Os02g47390Os.51925.1.S1_at1/112+28922837..28926136expressed protein
LOC_Os02g47400Os.52664.1.S1_at11/112+28929567..28933388pectinacetylesterase family protein, putative, expressed
LOC_Os02g47410Os.17381.1.S1_at11/112+28933917..28942098Protein kinase domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51095.1.A1_at--983--9991Chr02:28910508..28910532 (25 bp)
TAGCTGTAGCTACTGCTGGTCTATC
LOC_Os02g47350
Os.51095.1.A1_at--832--4191Chr02:28910545..28910569 (25 bp)
CCCGCTAACAGCATTCCTGGAGATT
LOC_Os02g47350
Os.51095.1.A1_at--378--10831Chr02:28910571..28910595 (25 bp)
TTGGTGCTGGAGTCATGCGATTTGC
LOC_Os02g47350
Os.51095.1.A1_at--1077--5431Chr02:28910680..28910704 (25 bp)
GAACCTGTGTTCAAGTCCTCCATTG
LOC_Os02g47350
Os.51095.1.A1_at--805--4752Chr02:28910754..28910778 (25 bp)
GCTGAACTGAATGTACCATGCTTTA
LOC_Os02g47350
Os.51095.1.A1_at--143--10331Chr02:28910775..28910799 (25 bp)
TTTACAGATAAGTCCAGCGCTCGTT
LOC_Os02g47350
Os.51095.1.A1_at--362--3391Chr02:28910789..28910813 (25 bp)
CAGCGCTCGTTTTTCATATGTTTTC
LOC_Os02g47350
Os.51095.1.A1_at--434--271Chr02:28910804..28910828 (25 bp)
ATATGTTTTCTGCTCTACTATGAGA
LOC_Os02g47350
Os.51095.1.A1_at--911--10311Chr02:28910847..28910871 (25 bp)
TTTCTCTCATCTTTTCAACAACTGT
LOC_Os02g47350
Os.51095.1.A1_at--989--2551NONE
AACTGTTCTATCTGAAACTACCGGG
NONE
Os.51095.1.A1_at--1129--7191NONE
GTCGTCTGAGGTTGAGTTTTCTTCT
NONE
Target Sequence 
TAGCTGTAGCTACTGCTGGTCTATCCCCACAGAGTTCCCCGCTAACAGCATTCCTGGAGATTATTGGTGCTGGAGTCATG
CGATTTGCAGCAATTTGCTTCCAATTTAATTGGTTCATGACCATCGAGAACTGGTATGCCAAGAACAAGAAGCATGCGTG
AAAGGATAAGCCGAACCTGTGTTCAAGTCCTCCATTGAGAAATTGTAGAAGTTACAATGCAACAATAAATTAACTTGTTA
GTTCCAGCTGAACTGAATGTACCATGCTTTACAGATAAGTCCAGCGCTCGTTTTTCATATGTTTTCTGCTCTACTATGAG
ATCATATGAATAATGTAGATTTCTCTCATCTTTTCAACAACTGTTCTATCTGAAACTACCGGGGTCGTCTGAGGTTGAGT
TTTCTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51095.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis