Browse Element(s) Details


Os.17381.1.S1_at

Description gb:AK066639.1
DB_XREF= gi:32976657
TID=Os.17381.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17381 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-033-H04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013073M11, full insert sequence.
FL= gb:AK104341.1 gb:AK066639.1 gb:AK099652.1 gb:AK066790.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4741011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g47350Os.51095.1.A1_at9/112+28908875..28911021oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os02g47360OsAffx.24765.1.S1_at11/112+28911931..28914888LAGLIDADG DNA endonuclease family protein, expressed
LOC_Os02g47370Os.55550.1.S1_at10/112+28915307..28915923expressed protein
LOC_Os02g47380Os.17546.2.S1_x_at1/112+28917818..28921944retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g47390Os.18947.1.S1_at11/112+28922837..28926136expressed protein
LOC_Os02g47390Os.54282.1.S1_x_at2/112+28922837..28926136expressed protein
LOC_Os02g47390Os.51925.1.S1_at1/112+28922837..28926136expressed protein
LOC_Os02g47400Os.52664.1.S1_at11/112+28929567..28933388pectinacetylesterase family protein, putative, expressed
LOC_Os02g47410Os.17381.1.S1_at11/112+28933917..28942098Protein kinase domain containing protein, expressed
LOC_Os02g47420Os.18687.1.S1_a_at11/112+28947167..28953256pollen-specific kinase partner protein, putative, expressed
LOC_Os02g47430Os.55138.1.S1_x_at3/112+28958585..28959349expressed protein
LOC_Os02g47440Os.20822.1.A1_at11/112+28961714..28966120SNARE domain containing protein, expressed
LOC_Os02g47440OsAffx.24766.1.S1_at9/112+28961714..28966120SNARE domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005737cellular_componentcytoplasm
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17381.1.S1_at--553--2631Chr02:28934937..28934961 (25 bp)
AACCATATGACTGCGAGCTACCTAC
LOC_Os02g47410
Os.17381.1.S1_at--461--5251Chr02:28934902..28934926 (25 bp)
GAATCATCACAATGGTCAGCCTGTA
LOC_Os02g47410
Os.17381.1.S1_at--43--151Chr02:28934870..28934894 (25 bp)
ATTATGGCATGGCAGAACCTCCACC
LOC_Os02g47410
Os.17381.1.S1_at--260--3371Chr02:28934849..28934873 (25 bp)
CACCTGCTACTATGGCTGACGGAAT
LOC_Os02g47410
Os.17381.1.S1_at--755--8591Chr02:28934269..28934293 (25 bp)
TGGTCACTCTTTTACAGCAGGCGGA
LOC_Os02g47410
Os.17381.1.S1_at--65--10851Chr02:28934141..28934165 (25 bp)
TTGGTTGCATTGCTTACGGGCTGTT
LOC_Os02g47410
Os.17381.1.S1_at--88--91Chr02:28934098..28934122 (25 bp)
ATTCCTCTAATTGATCCCTTCGCAA
LOC_Os02g47410
Os.17381.1.S1_at--1003--3011Chr02:28934075..28934099 (25 bp)
AATGCTCCGGCTCATAGAACTGTAT
LOC_Os02g47410
Os.17381.1.S1_at--550--10011Chr02:28934032..28934056 (25 bp)
TAGCATTCTCTGTTGGTTTCTTCTT
LOC_Os02g47410
Os.17381.1.S1_at--447--8011Chr02:28933975..28933999 (25 bp)
GGAGGCTTCTGCCTGCTGCAAAAAC
LOC_Os02g47410
Os.17381.1.S1_at--120--10771Chr02:28933933..28933957 (25 bp)
TTGAGCAGCCCCTACTTTCAGAATG
LOC_Os02g47410
Target Sequence 
AACCATATGACTGCGAGCTACCTACGTCCAATGGGGAATCATCACAATGGTCAGCCTGTATGGCCTAATTATGGCATGGC
AGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGGGAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGC
CGTCTTCCTTTGCAGGAAAGGATTTTGGAAGGATTTTCTAGTATGGATCTGGAGGAATGCCATTCAATTGGTTGCATTAG
TAGTTTGTATTTGCAACTCTTGGTTGCATTGCTTACGGGCTGTTGATTTTGCAGTTTGTTGCATTCCTCTAATTGATCCC
TTCGCAATGCTCCGGCTCATAGAACTGTATGGTATGGGTCTGTAATTGTAGCATTCTCTGTTGGTTTCTTCTTTTCGTTT
TTGGTTTATTTGTTATACATCGAGCGGAGGCTTCTGCCTGCTGCAAAAACCCAGCGGGAAAAAGAAGTTGAGCAGCCCCT
ACTTTCAGAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17381.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis