Browse Element(s) Details


Os.20822.1.A1_at

Description gb:AK071767.1
DB_XREF= gi:32981790
TID=Os.20822.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.20822 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023113L24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023113L24, full insert sequence.
FL= gb:AK071767.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4744011/11SNARE domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g47410Os.17381.1.S1_at11/112+28933917..28942098Protein kinase domain containing protein, expressed
LOC_Os02g47420Os.18687.1.S1_a_at11/112+28947167..28953256pollen-specific kinase partner protein, putative, expressed
LOC_Os02g47430Os.55138.1.S1_x_at3/112+28958585..28959349expressed protein
LOC_Os02g47440Os.20822.1.A1_at11/112+28961714..28966120SNARE domain containing protein, expressed
LOC_Os02g47440OsAffx.24766.1.S1_at9/112+28961714..28966120SNARE domain containing protein, expressed
LOC_Os02g47450Os.7506.1.S1_at11/112+28972783..28974546expressed protein
LOC_Os02g47460OsAffx.2990.1.S1_at10/112+28978398..28979955hypothetical protein
LOC_Os02g47470Os.12145.1.S1_at11/112+28989848..28992599Cytochrome P450 family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0000903biological_processcellular morphogenesis during vegetative growth
GO:0006886biological_processintracellular protein transport
GO:0006891biological_processintra-Golgi vesicle-mediated transport
GO:0006896biological_processGolgi to vacuole transport
GO:0006944biological_processmembrane fusion
GO:0007033biological_processvacuole organization and biogenesis
GO:0009660biological_processamyloplast organization and biogenesis
GO:0009959biological_processnegative gravitropism
GO:0010118biological_processstomatal movement
GO:0005770cellular_componentlate endosome
GO:0005802cellular_componentGolgi trans face
GO:0009705cellular_componentvacuolar membrane (sensu Magnoliophyta)
GO:0016021cellular_componentintegral to membrane
GO:0030140cellular_componenttrans-Golgi network transport vesicle
GO:0005486molecular_functiont-SNARE activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20822.1.A1_at--669--2911Chr02:28962440..28962464 (25 bp)
AAGGATCTTGCTACACTTGTGCATA
LOC_Os02g47440
Os.20822.1.A1_at--660--10131Chr02:28962085..28962109 (25 bp)
TTTGGCAACTTGAGGCGCGACGTAG
LOC_Os02g47440
Os.20822.1.A1_at--616--6551Chr02:28962059..28962083 (25 bp)
GATTACTGGTGCACTCGGTAGCATA
LOC_Os02g47440
Os.20822.1.A1_at--1120--10431Chr02:28962033..28962057 (25 bp)
TTAAAAGCCATCTGCATCGGTCCTT
LOC_Os02g47440
Os.20822.1.A1_at--943--9051Chr02:28962021..28962045 (25 bp)
TGCATCGGTCCTTGATCTTCTCGAA
LOC_Os02g47440
Os.20822.1.A1_at--1041--2751Chr02:28961991..28962015 (25 bp)
AAGACTGTCGCTCACGAAACTGTAC
LOC_Os02g47440
Os.20822.1.A1_at--185--6071Chr02:28961932..28961956 (25 bp)
GAGTTCATTTCCTGATGTCATGCGT
LOC_Os02g47440
Os.20822.1.A1_at--1111--6331Chr02:28961871..28961895 (25 bp)
GATGCTCTTTTATTTTGCCGACGAA
LOC_Os02g47440
Os.20822.1.A1_at--420--9171Chr02:28961856..28961880 (25 bp)
TGCCGACGAACTTTCACTTTGTAAG
LOC_Os02g47440
Os.20822.1.A1_at--473--5951Chr02:28961807..28961831 (25 bp)
GAGCAACTAAGTTCTGTCTTGTAAA
LOC_Os02g47440
Os.20822.1.A1_at--809--1071Chr02:28961734..28961758 (25 bp)
AGTGGCTTGGGTTTCATACGTGGAA
LOC_Os02g47440
Target Sequence 
AAGGATCTTGCTACACTTGTGCATATTCAAGGAGTTACAATCGAGGAAATCGATACAAACATTGAGAATTCTGCAGCAGC
AACCAAAGAGGCAAAGACAGAANTCGCGAAAGCGTCCAAGACTCAGAAATCGAATTCATCACTGCTCTGCATTCTTCTGG
TGATCTTCGGGGTTGTCTTGCTAATTGTGATAATAGTTTTGGCAACTTGAGGCGCGACGTAGAGATTACTGGTGCACTCG
GTAGCATATTTAAAAGCCATCTGCATCGGTCCTTGATCTTCTCGAAGTGCAAAGACTGTCGCTCACGAAACTGTACAAGT
TTGTTGTTTGTTATAGGTTTTCTGAATTGTGAGTTCATTTCCTGATGTCATGCGTGAGTCTTTTTTTCATGGCTTGCCTT
GAGTGAACAGTGATGCTCTTTTATTTTGCCGACGAACTTTCACTTTGTAAGTATTTTCAGTGAATAAAAACAAAAGAGCA
ACTAAGTTCTGTCTTGTAAACCCCCGTAAAATAAACTTGTCGTTGTATCATCAACGCCCTCACACTTCAGTGGCTTGGGT
TTCATACGTGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20822.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis