Browse Element(s) Details


Os.7506.1.S1_at

Description gb:AK105992.1
DB_XREF= gi:32991201
TID=Os.7506.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7506 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-205-H02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-205-H02, full insert sequence.
FL= gb:AK105992.1 gb:AK060227.1 gb:AK071752.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4745011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g47420Os.18687.1.S1_a_at11/112+28947167..28953256pollen-specific kinase partner protein, putative, expressed
LOC_Os02g47430Os.55138.1.S1_x_at3/112+28958585..28959349expressed protein
LOC_Os02g47440Os.20822.1.A1_at11/112+28961714..28966120SNARE domain containing protein, expressed
LOC_Os02g47440OsAffx.24766.1.S1_at9/112+28961714..28966120SNARE domain containing protein, expressed
LOC_Os02g47450Os.7506.1.S1_at11/112+28972783..28974546expressed protein
LOC_Os02g47460OsAffx.2990.1.S1_at10/112+28978398..28979955hypothetical protein
LOC_Os02g47470Os.12145.1.S1_at11/112+28989848..28992599Cytochrome P450 family protein, expressed
LOC_Os02g47480OsAffx.20858.5.S1_x_at9/112+28997474..29009057hypothetical protein
LOC_Os02g47480Os.41695.15.S1_s_at7/112+28997474..29009057hypothetical protein
LOC_Os02g47480OsAffx.20858.1.S1_x_at5/112+28997474..29009057hypothetical protein
LOC_Os02g47480Os.41695.5.S1_x_at5/112+28997474..29009057hypothetical protein
LOC_Os02g47480Os.41695.3.S1_x_at4/112+28997474..29009057hypothetical protein
LOC_Os02g47480Os.41695.2.S1_x_at4/112+28997474..29009057hypothetical protein
LOC_Os02g47480OsAffx.20858.4.S1_x_at3/112+28997474..29009057hypothetical protein
LOC_Os02g47480Os.41695.4.S1_x_at2/112+28997474..29009057hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7506.1.S1_at--986--511Chr02:28973998..28974022 (25 bp)
ATCGAAGCAGTGACCCGCCGGCCTG
LOC_Os02g47450
Os.7506.1.S1_at--715--3911Chr02:28974136..28974160 (25 bp)
CTGGCAAAGGCCAACGGCTGGTGAT
LOC_Os02g47450
Os.7506.1.S1_at--401--4951Chr02:28974222..28974246 (25 bp)
GCATTACTGACAAAATTACTGACCA
LOC_Os02g47450
Os.7506.1.S1_at--357--1031Chr02:28974249..28974273 (25 bp)
AGGTCCAAGACCGTGCAAAATGTAA
LOC_Os02g47450
Os.7506.1.S1_at--588--6451Chr02:28974283..28974307 (25 bp)
GATCAAACAGATCCACGCAAAGAAA
LOC_Os02g47450
Os.7506.1.S1_at--746--2131Chr02:28974332..28974356 (25 bp)
ACAGCATCTTAAGACATAGCCGAGT
LOC_Os02g47450
Os.7506.1.S1_at--660--9991Chr02:28974348..28974372 (25 bp)
TAGCCGAGTTCGAACATGGTGATTG
LOC_Os02g47450
Os.7506.1.S1_at--319--6111Chr02:28974385..28974409 (25 bp)
GAGTCGAATGTGAGTCGTACGATTT
LOC_Os02g47450
Os.7506.1.S1_at--1079--10431Chr02:28974408..28974432 (25 bp)
TTAGTCGTATGTATAGCAGGATTCT
LOC_Os02g47450
Os.7506.1.S1_at--336--10371Chr02:28974438..28974462 (25 bp)
TTTTTAGCTCGCCTATGCCAGATTT
LOC_Os02g47450
Os.7506.1.S1_at--505--9331Chr02:28974446..28974470 (25 bp)
TCGCCTATGCCAGATTTTCGTGATG
LOC_Os02g47450
Target Sequence 
ATCGAAGCAGTGACCCGCCGGCCTGGCCGGGGCGGAACACGCGGGGCGGGACGGGCCAACCGGAGGAGAGGCGGGTGGAC
GGTGCTCCGCGCTGTTCGTCCCGCAAAGGCCAAGCGGCGTGGGGGCAATCTCCGCTTGCTGGCAAAGGCCAACGGCTGGT
GATGGGTGGGGGCGGGTATACCGGTGGGTTAGAAGATATTTTAGCTGGACAAAGGTAGTACATAGCATTACTGACAAAAT
TACTGACCAAGAGGTCCAAGACCGTGCAAAATGTAAATGAAACCAGATCAAACAGATCCACGCAAAGAAAGTAAAGGTTG
TACATGAATTAATTACAGCATCTTAAGACATAGCCGAGTTCGAACATGGTGATTGGTGGATGTGGCAGAGTCGAATGTGA
GTCGTACGATTTAGTCGTATGTATAGCAGGATTCTATTTTTTTTTAGCTCGCCTATGCCAGATTTTCGTGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7506.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis