Browse Element(s) Details


OsAffx.2990.1.S1_at

Description tigr:9630.m04617
TID=OsAffx.2990.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4746010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g47430Os.55138.1.S1_x_at3/112+28958585..28959349expressed protein
LOC_Os02g47440Os.20822.1.A1_at11/112+28961714..28966120SNARE domain containing protein, expressed
LOC_Os02g47440OsAffx.24766.1.S1_at9/112+28961714..28966120SNARE domain containing protein, expressed
LOC_Os02g47450Os.7506.1.S1_at11/112+28972783..28974546expressed protein
LOC_Os02g47460OsAffx.2990.1.S1_at10/112+28978398..28979955hypothetical protein
LOC_Os02g47470Os.12145.1.S1_at11/112+28989848..28992599Cytochrome P450 family protein, expressed
LOC_Os02g47480OsAffx.20858.5.S1_x_at9/112+28997474..29009057hypothetical protein
LOC_Os02g47480Os.41695.15.S1_s_at7/112+28997474..29009057hypothetical protein
LOC_Os02g47480OsAffx.20858.1.S1_x_at5/112+28997474..29009057hypothetical protein
LOC_Os02g47480Os.41695.5.S1_x_at5/112+28997474..29009057hypothetical protein
LOC_Os02g47480Os.41695.3.S1_x_at4/112+28997474..29009057hypothetical protein
LOC_Os02g47480Os.41695.2.S1_x_at4/112+28997474..29009057hypothetical protein
LOC_Os02g47480OsAffx.20858.4.S1_x_at3/112+28997474..29009057hypothetical protein
LOC_Os02g47480Os.41695.4.S1_x_at2/112+28997474..29009057hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2990.1.S1_at--718--6671Chr02:28979896..28979920 (25 bp)
GTTGCGCCACTCTGCCTCGATCGTG
LOC_Os02g47460
OsAffx.2990.1.S1_at--447--9091Chr02:28979828..28979852 (25 bp)
TGCTCGTGCCGTCGAAGGAGTCGGC
LOC_Os02g47460
OsAffx.2990.1.S1_at--473--1151Chr02:28979810..28979834 (25 bp)
AGTCGGCGACGAAGGTGTATATTGT
LOC_Os02g47460
OsAffx.2990.1.S1_at--539--5311Chr02:28979800..28979824 (25 bp)
GAAGGTGTATATTGTCGGGATTTGC
LOC_Os02g47460
OsAffx.2990.1.S1_at--1102--31Chr02:28979790..28979814 (25 bp)
ATTGTCGGGATTTGCAGTGCCAGCC
LOC_Os02g47460
OsAffx.2990.1.S1_at--135--7671Chr02:28979784..28979808 (25 bp)
GGGATTTGCAGTGCCAGCCCGAGTC
LOC_Os02g47460
OsAffx.2990.1.S1_at--147--1131Chr02:28979775..28979799 (25 bp)
AGTGCCAGCCCGAGTCCGTTCAACG
LOC_Os02g47460
OsAffx.2990.1.S1_at--930--6171NONE
GAGGAGCATGGAAAGTCCCGGTTTT
NONE
OsAffx.2990.1.S1_at--958--9211Chr02:28978505..28978529 (25 bp)
TCCACCAGTGTGTTCATGCTCATGA
LOC_Os02g47460
OsAffx.2990.1.S1_at--420--4331Chr02:28978462..28978486 (25 bp)
CCATCCCAACGATGAGCAGCGGAAA
LOC_Os02g47460
OsAffx.2990.1.S1_at--813--4371Chr02:28978457..28978481 (25 bp)
CCAACGATGAGCAGCGGAAAGAAGT
LOC_Os02g47460
Target Sequence 
GTTGCGCCACTCTGCCTCGATCGTGCCGACCATTCCCGCCACCATGAGCAACCCAAACACCACACCCCTGCTCGTGCCGT
CGAAGGAGTCGGCGACGAAGGTGTATATTGTCGGGATTTGCAGTGCCAGCCCGAGTCCGTTCAACGCCGCCGTCACCGCC
ATCTGCATCGCACCATGTACGCAAAAGCATGTCAACCATGGAGGAGCATGGAAAGTCCCGGTTTTTAATACAATCGGGAC
TATTGTAAAATCTGGTCGACCGACCAAAGATGGTTTCTCCACCAGTGTGTTCATGCTCATGACCGGCATGCTTGACTCCG
CCATCCCAACGATGAGCAGCGGAAAGAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2990.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis