Browse Element(s) Details


Os.12145.1.S1_at

Description gb:AK067007.1
DB_XREF= gi:32977025
TID=Os.12145.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12145 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013091D15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013091D15, full insert sequence.
FL= gb:AK067007.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4747011/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g47440Os.20822.1.A1_at11/112+28961714..28966120SNARE domain containing protein, expressed
LOC_Os02g47440OsAffx.24766.1.S1_at9/112+28961714..28966120SNARE domain containing protein, expressed
LOC_Os02g47450Os.7506.1.S1_at11/112+28972783..28974546expressed protein
LOC_Os02g47460OsAffx.2990.1.S1_at10/112+28978398..28979955hypothetical protein
LOC_Os02g47470Os.12145.1.S1_at11/112+28989848..28992599Cytochrome P450 family protein, expressed
LOC_Os02g47480OsAffx.20858.5.S1_x_at9/112+28997474..29009057hypothetical protein
LOC_Os02g47480Os.41695.15.S1_s_at7/112+28997474..29009057hypothetical protein
LOC_Os02g47480OsAffx.20858.1.S1_x_at5/112+28997474..29009057hypothetical protein
LOC_Os02g47480Os.41695.5.S1_x_at5/112+28997474..29009057hypothetical protein
LOC_Os02g47480Os.41695.3.S1_x_at4/112+28997474..29009057hypothetical protein
LOC_Os02g47480Os.41695.2.S1_x_at4/112+28997474..29009057hypothetical protein
LOC_Os02g47480OsAffx.20858.4.S1_x_at3/112+28997474..29009057hypothetical protein
LOC_Os02g47480Os.41695.4.S1_x_at2/112+28997474..29009057hypothetical protein
LOC_Os02g47490Os.50195.1.S1_at11/112+29013344..29014904expressed protein
LOC_Os02g47500Os.50589.1.S1_at11/112+29015804..29019172nodulin, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12145.1.S1_at--977--1131Chr02:28992109..28992133 (25 bp)
AGTCCTTGTACAGATTCTTCAGCTA
LOC_Os02g47470
Os.12145.1.S1_at--955--1251Chr02:28992120..28992144 (25 bp)
AGATTCTTCAGCTAGGACCACGGTT
LOC_Os02g47470
Os.12145.1.S1_at--1084--10071Chr02:28992132..28992156 (25 bp)
TAGGACCACGGTTGGCAATCGAGAG
LOC_Os02g47470
Os.12145.1.S1_at--450--2411Chr02:28992186..28992210 (25 bp)
AAACACTACGTAGACATCTGAGCTA
LOC_Os02g47470
Os.12145.1.S1_at--867--2091Chr02:28992199..28992223 (25 bp)
ACATCTGAGCTAGGGAGCGCCACAA
LOC_Os02g47470
Os.12145.1.S1_at--982--6211Chr02:28992354..28992378 (25 bp)
GAGGCCCTGATTGGGATGTAAGCTA
LOC_Os02g47470
Os.12145.1.S1_at--812--731Chr02:28992369..28992393 (25 bp)
ATGTAAGCTAGGTTGCCCGCCTGAA
LOC_Os02g47470
Os.12145.1.S1_at--525--8951Chr02:28992390..28992414 (25 bp)
TGAAAGCAGGCTGGCATGCAGATGC
LOC_Os02g47470
Os.12145.1.S1_at--1095--631Chr02:28992411..28992435 (25 bp)
ATGCAGCTATAGGTCGAATAATCGA
LOC_Os02g47470
Os.12145.1.S1_at--106--8051Chr02:28992529..28992553 (25 bp)
GGAGAGCGACTCCTCTGTACCGTTT
LOC_Os02g47470
Os.12145.1.S1_at--743--6971Chr02:28992545..28992569 (25 bp)
GTACCGTTTCGTCCAACTCAAGAGA
LOC_Os02g47470
Target Sequence 
AGTCCTTGTACAGATTCTTCAGCTAGGACCACGGTTGGCAATCGAGAGGAGGAGCAGAGGAGTTGATGAAAAAAAACCAA
ACACTACGTAGACATCTGAGCTAGGGAGCGCCACAAAGAAGTGGCCCTTAATTGTAAAACCAACCATTTTTTATCCTTTT
TTGCTTAGTTTTTTTTTTGGCCAACAACTATAGGAGAAGAGTAGAGAAGAGAAGAGAAATTGGGGAGAAAATACAGGGAG
GATGAAGAGGCCCTGATTGGGATGTAAGCTAGGTTGCCCGCCTGAAAGCAGGCTGGCATGCAGATGCAGCTATAGGTCGA
ATAATCGAGGCGAGCGATGATGGACGGATGGATCNATTCATCGATCGCCAGAGTCAAANGGGAAGAACGTCGTGATCCCC
CGCGGGCTAAGCCAGGCCACGGGAGAGCGACTCCTCTGTACCGTTTCGTCCAACTCAAGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12145.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis