Browse Element(s) Details


Os.50195.1.S1_at

Description gb:AK120025.1
DB_XREF= gi:37989648
TID=Os.50195.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50195 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-186-C08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-186-C08, full insert sequence.
FL= gb:AK120025.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4749011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g47470Os.12145.1.S1_at11/112+28989848..28992599Cytochrome P450 family protein, expressed
LOC_Os02g47480OsAffx.20858.5.S1_x_at9/112+28997474..29009057hypothetical protein
LOC_Os02g47480Os.41695.15.S1_s_at7/112+28997474..29009057hypothetical protein
LOC_Os02g47480OsAffx.20858.1.S1_x_at5/112+28997474..29009057hypothetical protein
LOC_Os02g47480Os.41695.5.S1_x_at5/112+28997474..29009057hypothetical protein
LOC_Os02g47480Os.41695.3.S1_x_at4/112+28997474..29009057hypothetical protein
LOC_Os02g47480Os.41695.2.S1_x_at4/112+28997474..29009057hypothetical protein
LOC_Os02g47480OsAffx.20858.4.S1_x_at3/112+28997474..29009057hypothetical protein
LOC_Os02g47480Os.41695.4.S1_x_at2/112+28997474..29009057hypothetical protein
LOC_Os02g47490Os.50195.1.S1_at11/112+29013344..29014904expressed protein
LOC_Os02g47500Os.50589.1.S1_at11/112+29015804..29019172nodulin, putative, expressed
LOC_Os02g47510Os.28290.1.S1_at11/112+29020221..29022390nine-cis-epoxycarotenoid dioxygenase4, putative, expressed
LOC_Os02g47520OsAffx.12538.1.S1_at11/112+29027503..29028196hypothetical protein
LOC_Os02g47530NANA2+29033065..29033391hypothetical protein
LOC_Os02g47540OsAffx.22947.1.S1_x_at11/112+29036887..29043250retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g47540OsAffx.22947.3.S1_x_at5/112+29036887..29043250retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g47540OsAffx.22947.2.S1_x_at3/112+29036887..29043250retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g47540OsAffx.22947.5.S1_x_at3/112+29036887..29043250retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50195.1.S1_at--200--7271Chr02:29013798..29013822 (25 bp)
GTCCATCAGGGCAAGGCACACAACA
LOC_Os02g47490
Os.50195.1.S1_at--206--9571Chr02:29013758..29013782 (25 bp)
TCTTCTTGCAGGATCGTGGCGCCGA
LOC_Os02g47490
Os.50195.1.S1_at--200--10611Chr02:29013696..29013720 (25 bp)
TTCTGCACCATCTACGACATGAGGG
LOC_Os02g47490
Os.50195.1.S1_at--860--2751Chr02:29013648..29013672 (25 bp)
AAGACGCCATTACGGCCAGTGGGTA
LOC_Os02g47490
Os.50195.1.S1_at--373--4011Chr02:29013587..29013611 (25 bp)
CGTGCGGCCGGCATGAGTGAACATT
LOC_Os02g47490
Os.50195.1.S1_at--632--8871Chr02:29013560..29013584 (25 bp)
TGATGATAGACCGTTGTGCCGCATT
LOC_Os02g47490
Os.50195.1.S1_at--161--7671Chr02:29013501..29013525 (25 bp)
GGGATATTTAGCTTGTTTTCGTGAA
LOC_Os02g47490
Os.50195.1.S1_at--818--211Chr02:29013449..29013473 (25 bp)
ATTTGTGGCGATTCGGTTGCAGTCG
LOC_Os02g47490
Os.50195.1.S1_at--832--9431Chr02:29013427..29013451 (25 bp)
TCGGTGTGTTCTACTATCAGCAGCA
LOC_Os02g47490
Os.50195.1.S1_at--800--5071Chr02:29013405..29013429 (25 bp)
GCACGCCTTTTTCTCCGTGATTTTA
LOC_Os02g47490
Os.50195.1.S1_at--487--1231Chr02:29013347..29013371 (25 bp)
AGTTGAATAATAGCCTCCCTTTGCT
LOC_Os02g47490
Target Sequence 
GTCCATCAGGGCAAGGCACACAACATTGGGGACCGCATCTTCTTCTTGCAGGATCGTGGCGCCGATGGCTACGGCGGCCA
GCAATGGCGGACGGTGGAGTTCTTCTGCACCATCTACGACATGAGGGAACGCCGGTCGCAGCTGTTCCTCAAGACGCCAT
TACGGCCAGTGGGTAGCTTGGGGACGTGGCTGTTCCCTCCCTCCGGCCGTACGTGCGGCCGGCATGAGTGAACATTGCTG
ATGATAGACCGTTGTGCCGCATTTTGAGAGATAATTTTCTCCAAATTATTGTGTTCTGGGATATTTAGCTTGTTTTCGTG
AATATACTTTTGTATGTTGATGATTGCTAATTTGTGGCGATTCGGTTGCAGTCGGTGTGTTCTACTATCAGCAGCACGCC
TTTTTCTCCGTGATTTTATTTTAGCCAAGTGATTATGAGATCAGTGAGTACAGTTGAATAATAGCCTCCCTTTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50195.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis