Browse Element(s) Details


OsAffx.12538.1.S1_at

Description tigr:9630.m04624
TID=OsAffx.12538.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4752011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g47480OsAffx.20858.5.S1_x_at9/112+28997474..29009057hypothetical protein
LOC_Os02g47480Os.41695.15.S1_s_at7/112+28997474..29009057hypothetical protein
LOC_Os02g47480OsAffx.20858.1.S1_x_at5/112+28997474..29009057hypothetical protein
LOC_Os02g47480Os.41695.5.S1_x_at5/112+28997474..29009057hypothetical protein
LOC_Os02g47480Os.41695.3.S1_x_at4/112+28997474..29009057hypothetical protein
LOC_Os02g47480Os.41695.2.S1_x_at4/112+28997474..29009057hypothetical protein
LOC_Os02g47480OsAffx.20858.4.S1_x_at3/112+28997474..29009057hypothetical protein
LOC_Os02g47480Os.41695.4.S1_x_at2/112+28997474..29009057hypothetical protein
LOC_Os02g47490Os.50195.1.S1_at11/112+29013344..29014904expressed protein
LOC_Os02g47500Os.50589.1.S1_at11/112+29015804..29019172nodulin, putative, expressed
LOC_Os02g47510Os.28290.1.S1_at11/112+29020221..29022390nine-cis-epoxycarotenoid dioxygenase4, putative, expressed
LOC_Os02g47520OsAffx.12538.1.S1_at11/112+29027503..29028196hypothetical protein
LOC_Os02g47530NANA2+29033065..29033391hypothetical protein
LOC_Os02g47540OsAffx.22947.1.S1_x_at11/112+29036887..29043250retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g47540OsAffx.22947.3.S1_x_at5/112+29036887..29043250retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g47540OsAffx.22947.2.S1_x_at3/112+29036887..29043250retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g47540OsAffx.22947.5.S1_x_at3/112+29036887..29043250retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g47550NANA2+29046402..29046770hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12538.1.S1_at--409--1491Chr02:29027552..29027576 (25 bp)
AGCAAGTGACAGTAATAGGGATAAC
LOC_Os02g47520
OsAffx.12538.1.S1_at--1042--7651Chr02:29027569..29027593 (25 bp)
GGGATAACAGAACCATTGCCTACGA
LOC_Os02g47520
OsAffx.12538.1.S1_at--565--6451Chr02:29027571..29027595 (25 bp)
GATAACAGAACCATTGCCTACGACA
LOC_Os02g47520
OsAffx.12538.1.S1_at--531--5431Chr02:29027578..29027602 (25 bp)
GAACCATTGCCTACGACAATATGGG
LOC_Os02g47520
OsAffx.12538.1.S1_at--773--2231Chr02:29027593..29027617 (25 bp)
ACAATATGGGAAGGAGTGACCGTAC
LOC_Os02g47520
OsAffx.12538.1.S1_at--738--8911Chr02:29027609..29027633 (25 bp)
TGACCGTACGGTGTGGAGAATTAGA
LOC_Os02g47520
OsAffx.12538.1.S1_at--415--7751Chr02:29028113..29028137 (25 bp)
GGTGATCGAGCCGTTGTTGCCAGAA
LOC_Os02g47520
OsAffx.12538.1.S1_at--149--531Chr02:29028117..29028141 (25 bp)
ATCGAGCCGTTGTTGCCAGAAGTGT
LOC_Os02g47520
OsAffx.12538.1.S1_at--501--1671Chr02:29028121..29028145 (25 bp)
AGCCGTTGTTGCCAGAAGTGTTGCC
LOC_Os02g47520
OsAffx.12538.1.S1_at--403--6651Chr02:29028125..29028149 (25 bp)
GTTGTTGCCAGAAGTGTTGCCACCA
LOC_Os02g47520
OsAffx.12538.1.S1_at--770--4371Chr02:29028131..29028155 (25 bp)
GCCAGAAGTGTTGCCACCACCTTGG
LOC_Os02g47520
Target Sequence 
AGCAAGTGACAGTAATAGGGATAACAGAACCATTGCCTACGACAATATGGGAAGGAGTGACCGTACGGTGTGGAGAATTA
GAAAGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGATCGAGCCGTTGTTGCCAGAAGTGTTGCCACCACCTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12538.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis