Browse Element(s) Details


Os.50589.1.S1_at

Description gb:AK102115.1
DB_XREF= gi:32987324
TID=Os.50589.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50589 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033084H22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033084H22, full insert sequence.
FL= gb:AK102115.1 gb:AK121966.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4750011/11nodulin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g47470Os.12145.1.S1_at11/112+28989848..28992599Cytochrome P450 family protein, expressed
LOC_Os02g47480OsAffx.20858.5.S1_x_at9/112+28997474..29009057hypothetical protein
LOC_Os02g47480Os.41695.15.S1_s_at7/112+28997474..29009057hypothetical protein
LOC_Os02g47480OsAffx.20858.1.S1_x_at5/112+28997474..29009057hypothetical protein
LOC_Os02g47480Os.41695.5.S1_x_at5/112+28997474..29009057hypothetical protein
LOC_Os02g47480Os.41695.3.S1_x_at4/112+28997474..29009057hypothetical protein
LOC_Os02g47480Os.41695.2.S1_x_at4/112+28997474..29009057hypothetical protein
LOC_Os02g47480OsAffx.20858.4.S1_x_at3/112+28997474..29009057hypothetical protein
LOC_Os02g47480Os.41695.4.S1_x_at2/112+28997474..29009057hypothetical protein
LOC_Os02g47490Os.50195.1.S1_at11/112+29013344..29014904expressed protein
LOC_Os02g47500Os.50589.1.S1_at11/112+29015804..29019172nodulin, putative, expressed
LOC_Os02g47510Os.28290.1.S1_at11/112+29020221..29022390nine-cis-epoxycarotenoid dioxygenase4, putative, expressed
LOC_Os02g47520OsAffx.12538.1.S1_at11/112+29027503..29028196hypothetical protein
LOC_Os02g47530NANA2+29033065..29033391hypothetical protein
LOC_Os02g47540OsAffx.22947.1.S1_x_at11/112+29036887..29043250retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g47540OsAffx.22947.3.S1_x_at5/112+29036887..29043250retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g47540OsAffx.22947.2.S1_x_at3/112+29036887..29043250retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g47540OsAffx.22947.5.S1_x_at3/112+29036887..29043250retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50589.1.S1_at--682--891Chr02:29018596..29018620 (25 bp)
AGGCCGTCAAACGTTCCACATGAAT
LOC_Os02g47500
Os.50589.1.S1_at--675--1451Chr02:29018632..29018656 (25 bp)
AGAAGTTGGTCACTGCTATCCCCTT
LOC_Os02g47500
Os.50589.1.S1_at--586--551Chr02:29018649..29018673 (25 bp)
ATCCCCTTCCTTACTCAGAATATAG
LOC_Os02g47500
Os.50589.1.S1_at--279--9831Chr02:29018748..29018772 (25 bp)
TAACAATGCTGTCATCTGTCCTTGG
LOC_Os02g47500
Os.50589.1.S1_at--198--8711Chr02:29018764..29018788 (25 bp)
TGTCCTTGGCTTAGTTCCCCATATG
LOC_Os02g47500
Os.50589.1.S1_at--63--9311Chr02:29018779..29018803 (25 bp)
TCCCCATATGGCTTCTCTTCAGAAA
LOC_Os02g47500
Os.50589.1.S1_at--1038--4931Chr02:29018807..29018831 (25 bp)
GCATTCTTATTCTTCATTTCCTAGG
LOC_Os02g47500
Os.50589.1.S1_at--468--5191Chr02:29018911..29018935 (25 bp)
GAATTGACTGTCCTTTCACCAAATG
LOC_Os02g47500
Os.50589.1.S1_at--831--2351Chr02:29018937..29018961 (25 bp)
AAAGCCAGCTCAGAAGCTCCGTCGG
LOC_Os02g47500
Os.50589.1.S1_at--867--7171Chr02:29018957..29018981 (25 bp)
GTCGGCTTAGTGAATCCCCAACAAG
LOC_Os02g47500
Os.50589.1.S1_at--790--2111Chr02:29019038..29019062 (25 bp)
ACATGTGCGCAAGTCAGAGCGGTTA
LOC_Os02g47500
Target Sequence 
AGGCCGTCAAACGTTCCACATGAATCATAACTCTTAAGAAGTTGGTCACTGCTATCCCCTTCCTTACTCAGAATATAGAT
AGAGAAAGCATGCATTAGAAAACATGAAGTGCCGCAAAGAAGATTCAAGTGAACGTAGTTAAGACTATATGTTAACAATG
CTGTCATCTGTCCTTGGCTTAGTTCCCCATATGGCTTCTCTTCAGAAAACAGCATTCTTATTCTTCATTTCCTAGGAGAA
GTTGATTTGTGTATGAGTAAAGAGAGGTTATGCTCATTTAGTTTTGTGAGACTAACAACTCTGAGGATGCTGCCTGAATT
GACTGTCCTTTCACCAAATGCAAAGCCAGCTCAGAAGCTCCGTCGGCTTAGTGAATCCCCAACAAGGCAACAATACGTAT
CCTGTTAACCTCNTGCATATGTAATTACTCTGTAAACATTATACATGTGCGCAAGTCAGAGCGGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50589.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis