Browse Element(s) Details


OsAffx.29724.6.S1_x_at

Description tigr:9640.m02183
TID=OsAffx.29724.6
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2303011/11hypothetical protein
LOC_Os02g247808/11hypothetical protein
LOC_Os02g473406/11hypothetical protein
LOC_Os02g240905/11hypothetical protein
LOC_Os03g413001/11hypothetical protein
LOC_Os08g158801/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g22980OsAffx.22368.1.S1_x_at1/1112+12987275..12990034retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g22990NANA12+12993594..13000268retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g23000NANA12+13002588..13005284retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g23010Os.46995.1.S1_x_at1/1112+13005852..13008735retrotransposon protein, putative, unclassified
LOC_Os12g23010OsAffx.1412.1.S1_at1/1112+13005852..13008735retrotransposon protein, putative, unclassified
LOC_Os12g23019NANA12+13011025..13011476NA
LOC_Os12g23030OsAffx.29724.6.S1_x_at11/1112+13014785..13018814hypothetical protein
LOC_Os12g23030OsAffx.29724.3.S1_x_at5/1112+13014785..13018814hypothetical protein
LOC_Os12g23030OsAffx.29724.1.S1_x_at4/1112+13014785..13018814hypothetical protein
LOC_Os12g23030OsAffx.29724.2.S1_x_at4/1112+13014785..13018814hypothetical protein
LOC_Os12g23040OsAffx.4918.1.S1_at3/1112+13019266..13027074transposon protein, putative, Mutator sub-class
LOC_Os12g23060OsAffx.22385.1.S1_x_at3/1112+13032470..13036126retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g23060OsAffx.20329.1.S1_at2/1112+13032470..13036126retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g23070Os.46862.1.S1_at4/1112+13036812..13037817hypothetical protein
LOC_Os12g23080OsAffx.20730.1.S1_x_at3/1112+13038907..13040276retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g23080OsAffx.20733.1.S1_x_at1/1112+13038907..13040276retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29724.6.S1_x_at--320--5013Chr12:13015325..13015349 (25 bp)
GCAGGCCAAGGTTTATCACAGCTTT
LOC_Os12g23030
OsAffx.29724.6.S1_x_at--204--1576Chr08:10405763..10405787 (25 bp)
AGCTTTGACTCTGTTGATGATGACC
NONE
OsAffx.29724.6.S1_x_at--488--6312Chr12:13015288..13015312 (25 bp)
GATGACCTTCACAACAGTTATCCTC
LOC_Os12g23030
OsAffx.29724.6.S1_x_at--1029--2193Chr12:13015278..13015302 (25 bp)
ACAACAGTTATCCTCTGGACTACCT
LOC_Os12g23030
OsAffx.29724.6.S1_x_at--967--9853Chr12:13015258..13015282 (25 bp)
TACCTTAACTCTATCACTCCAAATG
LOC_Os12g23030
OsAffx.29724.6.S1_x_at--1000--13Chr08:10405912..10405936 (25 bp)
ATTGTGCAACGGGACTAGACTAATG
NONE
OsAffx.29724.6.S1_x_at--362--3273Chr12:13015073..13015097 (25 bp)
CAAAAGGGTGTTCATCCCACGGATC
LOC_Os12g23030
OsAffx.29724.6.S1_x_at--687--9514Chr03:22919162..22919635 (25 bp)
TCTCAGTTTCGCAATGACCATTAAC
LOC_Os03g41300
OsAffx.29724.6.S1_x_at--837--8817Chr08:10406137..10406161 (25 bp)
TGTTGGGATCTATCTTCCAGAGCCC
NONE
OsAffx.29724.6.S1_x_at--264--1377Chr08:10406155..10406178 (24 bp)
AGAGCCCGTGTTTTCACATGGTCAG
NONE
OsAffx.29724.6.S1_x_at--63--7833Chr12:13014895..13014919 (25 bp)
GGTCAGCTATATGTCGCATTGTCAA
LOC_Os12g23030
Target Sequence 
GCAGGCCAAGGTTTATCACAGCTTTGACTCTGTTGATGATGACCTTCACAACAGTTATCCTCTGGACTACCTTAACTCTA
TCACTCCAAATGGTCTCTCACCACACGAGCTAATAGTAAAAATCAATTGTCCCGTGAATCTTCTTCGCAACCTTGATCCA
AATAATGGATTGTGCAACGGGACTAGACTAATGGTTAGAGCTTTTCAAGATAATGCAATTGATGCTGAAATTGTTGGTGG
ACAACATGCCAACAAAAGGGTGTTCATCCCACGGATCCCTTTGCCTCCCTCCGACGATATATCACTACCTTTCAAATTCA
AGAGGAAGCAATTCCCAATATGTCTCAGTTTCGCAATGACCATTAACAAATCACAAGGGCAAACCATCCCAAATGTTGGG
ATCTATCTTCCAGAGCCCGTGTTTTCACATGGTCAGCTATATGTCGCATTGTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29724.6.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis