Browse Element(s) Details


OsAffx.4918.1.S1_at

Description tigr:9634.m02324
TID=OsAffx.4918.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2358011/11hypothetical protein
LOC_Os12g230403/11transposon protein, putative, Mutator sub-class
LOC_Os06g073302/11transposon protein, putative, Mutator sub-class
LOC_Os11g430602/11transposon protein, putative, Mutator sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g23540OsAffx.27789.4.S1_at10/116+13737448..13738457hypothetical protein
LOC_Os06g23549OsAffx.27789.1.S1_at1/116+13740256..13740974NA
LOC_Os06g23560Os.54198.1.S1_at11/116+13742330..13744244UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os06g23570OsAffx.15581.1.S1_at11/116+13749550..13750947hypothetical protein
LOC_Os06g23580OsAffx.4918.1.S1_at11/116+13752472..13753181hypothetical protein
LOC_Os06g23590NANA6+13754125..13754577expressed protein
LOC_Os06g23600NANA6+13763454..13766165hypothetical protein
LOC_Os06g23610OsAffx.25936.2.S1_x_at8/116+13770057..13772612transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g23610OsAffx.25936.7.S1_s_at6/116+13770057..13772612transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g23610OsAffx.25936.1.S1_s_at5/116+13770057..13772612transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g23610OsAffx.25936.5.S1_x_at2/116+13770057..13772612transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g23620NANA6+13774353..13774954hypothetical protein
LOC_Os06g23630Os.10827.1.S1_x_at6/116+13775316..13778227transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g23630Os.46055.2.S1_x_at4/116+13775316..13778227transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4918.1.S1_at--631--1111Chr06:13752502..13752654 (25 bp)
AGTGAACTCCCTTCTAGGACTGACC
LOC_Os06g23580
OsAffx.4918.1.S1_at--532--3651Chr06:13752644..13752664 (21 bp)
CTTCTAGGACTGACCATGATGTGGA
LOC_Os06g23580
OsAffx.4918.1.S1_at--43--791Chr06:13752658..13752682 (25 bp)
ATGTGGAGTTTAGCGTGCACGTTCA
LOC_Os06g23580
OsAffx.4918.1.S1_at--36--5112Chr06:13752674..13752698 (25 bp)
GCACGTTCAGTTCGGTCAGTTTACA
LOC_Os06g23580
OsAffx.4918.1.S1_at--279--5333Chr12:13023353..13023377 (25 bp)
GAAGTGGCGCGTAAATGGCTTGAAT
LOC_Os12g23040
OsAffx.4918.1.S1_at--997--7912Chr12:13023379..13023403 (25 bp)
GGTTGTGGACTATCATCAGTGCACA
LOC_Os12g23040
OsAffx.4918.1.S1_at--447--412Chr06:13752766..13752790 (25 bp)
ATCAGTGCACATTGGAGAGCTTGGA
LOC_Os06g23580
OsAffx.4918.1.S1_at--518--7674Chr12:13023705..13023729 (25 bp)
GGGATAGTCTAGAGATAGCTCCAAT
LOC_Os12g23040
OsAffx.4918.1.S1_at--557--9531Chr06:13753094..13753118 (25 bp)
TCTACATAACCAAGTTCCTCAGCTT
LOC_Os06g23580
OsAffx.4918.1.S1_at--838--1232Chr06:13753106..13753130 (25 bp)
AGTTCCTCAGCTTGCTATTGATTGG
LOC_Os06g23580
OsAffx.4918.1.S1_at--539--3691Chr06:13753120..13753144 (25 bp)
CTATTGATTGGGATGCATTCGAGAT
LOC_Os06g23580
Target Sequence 
AGTGAACTCCCTTCTAGGACTGACCATGATGTGGAGTTTAGCGTGCACGTTCAGTTCGGTCAGTTTACAACTAAACTTGA
TGATGGTACTTGTGTTGAAGTGGCGCGTAAATGGCTTGAATGGGTTGTGGACTATCATCAGTGCACATTGGAGAGCTTGG
AAAAGGACCTTGCAGCAAGGGTCAATGAGGTAGCAATGGGTGAAGTTGTGATAGGCAGACAAGGTGATGCTCAAGAATGT
AGCAGTTGTATTGATTGGGATAGTCTAGAGATAGCTCCAATTCTACATAACCAAGTTCCTCAGCTTGCTATTGATTGGGA
TGCATTCGAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4918.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis