Browse Element(s) Details


OsAffx.27789.1.S1_at

Description gb:NM_183632.1
DB_XREF= gi:34894391
GEN=P0702D12.3
TID=OsAffx.27789.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative transposable element Tip100 protein (P0702D12.3), mRNA.
PROD=putative transposable element Tip100 protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1892011/11hAT family dimerisation domain containing protein
LOC_Os09g1453011/11hAT family dimerisation domain containing protein
LOC_Os08g348303/11transposase, putative
LOC_Os06g235491/11
LOC_Os07g255501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g18880Os.18542.1.S1_at11/111+10671954..10676557membrane associated salt-inducible protein, putative, expressed
LOC_Os01g18890OsAffx.22921.1.S1_x_at11/111+10676266..10678966Peroxidase family protein
LOC_Os01g18900NANA1+10683971..10684267stigma specific peroxidase precursor, putative
LOC_Os01g18910OsAffx.11103.1.S1_x_at11/111+10688176..10689272Peroxidase family protein
LOC_Os01g18910OsAffx.11103.1.S1_at11/111+10688176..10689272Peroxidase family protein
LOC_Os01g18920OsAffx.27789.3.S1_s_at11/111+10690105..10692692hAT family dimerisation domain containing protein
LOC_Os01g18920OsAffx.27789.1.S1_at11/111+10690105..10692692hAT family dimerisation domain containing protein
LOC_Os01g18920OsAffx.27789.2.S1_x_at6/111+10690105..10692692hAT family dimerisation domain containing protein
LOC_Os01g18930OsAffx.28306.1.S1_at11/111+10698404..10699908Peroxidase family protein
LOC_Os01g18930OsAffx.28306.1.S1_x_at11/111+10698404..10699908Peroxidase family protein
LOC_Os01g18940OsAffx.23301.1.S1_s_at11/111+10700561..10701978hypothetical protein
LOC_Os01g18940OsAffx.23301.2.S1_at11/111+10700561..10701978hypothetical protein
LOC_Os01g18950OsAffx.22919.2.S1_x_at11/111+10709917..10711049Peroxidase family protein
LOC_Os01g18950OsAffx.22919.1.S1_x_at5/111+10709917..10711049Peroxidase family protein
LOC_Os01g18960OsAffx.2035.1.S1_at11/111+10712534..10713258hypothetical protein
LOC_Os01g18970OsAffx.22919.1.S1_x_at11/111+10717197..10718401Peroxidase family protein
LOC_Os01g18970OsAffx.22919.2.S1_x_at4/111+10717197..10718401Peroxidase family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27789.1.S1_at--485--7914Chr12:4685401..4685424 (24 bp)
GGTTGGTGATCTTATGCTACTACGA
NONE
OsAffx.27789.1.S1_at--607--4833Chr09:8594195..8594219 (25 bp)
GCTACTACGAACTCAACTTGGAAAT
LOC_Os09g14530
OsAffx.27789.1.S1_at--784--10174Chr12:4685537..4685561 (25 bp)
TATCACTTGGTGTATAGGCTCATTG
NONE
OsAffx.27789.1.S1_at--678--914Chr12:4685552..4685576 (25 bp)
AGGCTCATTGAGTTATCATTGATAC
NONE
OsAffx.27789.1.S1_at--197--434Chr06:13740676..13740697 (22 bp)
ATCATTGATACTTCCGGTGGCAACG
LOC_Os06g23549
OsAffx.27789.1.S1_at--63--10674Chr04:9867783..9867807 (25 bp)
TTCCGGTGGCAACGGCTTCAGTTGA
NONE
OsAffx.27789.1.S1_at--584--1933Chr09:8594023..8594047 (25 bp)
ACGGCTTCAGTTGAGAGGGTCTTCT
LOC_Os09g14530
OsAffx.27789.1.S1_at--825--7813Chr09:8594006..8594030 (25 bp)
GGTCTTCTCAGCTATGTCTCTTATA
LOC_Os09g14530
OsAffx.27789.1.S1_at--72--7653Chr09:8593956..8593980 (25 bp)
GGGATGAATGGCTCAATGACTTGAT
LOC_Os09g14530
OsAffx.27789.1.S1_at--346--5694Chr04:22290728..22290752 (25 bp)
GACTTGATGATTTGCTACACTGAGA
NONE
OsAffx.27789.1.S1_at--542--5535Chr12:4685721..4685745 (25 bp)
GAAAAAATCATCCAACACTTTGAAG
NONE
Target Sequence 
GGTTGGTGATCTTATGCTACTACGAACTCAACTTGGAAATTTTATTAGCAATGTTAGGAGAAGTAAAGAATTTCTTGGAT
GTAAAGATCTTGCAAAGGTTGCTGAATTAATGGTTCANACCGGAAAGAATAGAACTTATCACTTGGTGTATAGGCTCATT
GAGTTATCATTGATACTTCCGGTGGCAACGGCTTCAGTTGAGAGGGTCTTCTCAGCTATGTCTCTTATAAAGANAGATTT
GCGAAACAAAATGGGGGATGAATGGCTCAATGACTTGATGATTTGCTACACTGAGAAGCAGATTTTTAGAAGTATTAGTG
ATGAAAAAATCATCCAACACTTTGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27789.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis